Computational analyses of bacterial strains from shotgun reads
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac013
Abstract: Shotgun sequencing is routinely employed to study bacteria in microbial communities. With the vast amount of shotgun sequencing reads generated in a metagenomic project, it is crucial to determine the microbial composition at the strain… read more here.
Keywords: computational analyses; bacterial strains; shotgun reads; strain ... See more keywords
Metabarcoding versus mapping unassembled shotgun reads for identification of prey consumed by arthropod epigeal predators
Sign Up to like & getrecommendations! Published in 2022 at "GigaScience"
DOI: 10.1093/gigascience/giac020
Abstract: Abstract Background A central challenge of DNA gut content analysis is to identify prey in a highly degraded DNA community. In this study, we evaluated prey detection using metabarcoding and a method of mapping unassembled… read more here.
Keywords: dna; unassembled shotgun; arthropod epigeal; shotgun reads ... See more keywords