Specimen Identification Through Multilocus Species Tree Constructed From Single‐Copy Orthologs (SCOs): A Case Study in Cymbidium Subgenus Jensoa
Sign Up to like & getrecommendations! Published in 2025 at "Ecology and Evolution"
DOI: 10.1002/ece3.71323
Abstract: ABSTRACT Standard barcodes and ultra‐barcode encounter significant challenges when delimiting and discriminating closely related species characterized by deep coalescence, hybrid speciation, gene flow, or low sequence variation. Single‐copy orthologs (SCOs) have been widely recognized as… read more here.
Keywords: copy orthologs; species tree; jensoa; single copy ... See more keywords
Community-aware single-copy content forwarding in Mobile Social Network
Sign Up to like & getrecommendations! Published in 2018 at "Wireless Networks"
DOI: 10.1007/s11276-017-1494-1
Abstract: One of the most challenging issues in Mobile Social Networks (MSNs) is to design a messages forwarding method that achieves high delivery and low communication overhead. Single-copy forwarding methods boasting minimum communication overhead are well-known… read more here.
Keywords: mobile social; method; copy; single copy ... See more keywords
Analysis and characterization of the Salix suchowensis chloroplast genome
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Forestry Research"
DOI: 10.1007/s11676-017-0531-3
Abstract: By screening sequence reads from the Salix suchowensis chloroplast (cp) genome that were generated by next-generation sequencing platforms, we assembled a complete circular pseudomolecule for the cp genome. This pseudomolecule is 155,508 bp long and has… read more here.
Keywords: suchowensis chloroplast; salix suchowensis; single copy; chloroplast genome ... See more keywords
Efficient formation of single-copy human artificial chromosomes
Sign Up to like & getrecommendations! Published in 2024 at "Science"
DOI: 10.1126/science.adj3566
Abstract: Large DNA assembly methodologies underlie milestone achievements in synthetic prokaryotic and budding yeast chromosomes. While budding yeast control chromosome inheritance through ~125-base pair DNA sequence-defined centromeres, mammals and many other eukaryotes use large, epigenetic centromeres.… read more here.
Keywords: single copy; chromosome; human artificial; artificial chromosomes ... See more keywords
Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.02105-21
Abstract: Microbial communities can be distinguished by discrete genetic and ecological characteristics. These sequence-discrete populations are foundational for investigating the composition and functional structures of microbial communities at high resolution. ABSTRACT An in-depth understanding of microbial… read more here.
Keywords: copy; sequence discrete; protein coding; sequence ... See more keywords
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides.
Sign Up to like & getrecommendations! Published in 2024 at "Genome"
DOI: 10.1139/gen-2023-0116
Abstract: For peanut, the lack of stable cytological markers is a barrier to tracking specific chromosomes, elucidating the genetic relationships between genomes and identifying chromosomal variations. Chromosome mapping using single-copy oligonucleotide (oligo) probe libraries has unique… read more here.
Keywords: duranensis; whole chromosome; single copy; chromosomes arachis ... See more keywords
A Single-Copy Sensitive and Field-Deployable One-Pot RT-RPA CRISPR/Cas12a Assay for the Specific Visual Detection of the Nipah Virus
Sign Up to like & getrecommendations! Published in 2024 at "Transboundary and Emerging Diseases"
DOI: 10.1155/2024/4118007
Abstract: Nipah virus (NiV) is an emerging bat-borne zoonotic virus that can be transmitted to humans and other animals through infected bats or contaminated foods. The disease is highly lethal in humans (40%–75%) and has the… read more here.
Keywords: detection; nipah virus; single copy; virus ... See more keywords
High-resolution chromosome painting with repetitive and single-copy oligonucleotides in Arachis species identifies structural rearrangements and genome differentiation
Sign Up to like & getrecommendations! Published in 2018 at "BMC Plant Biology"
DOI: 10.1186/s12870-018-1468-1
Abstract: BackgroundArachis contains 80 species that carry many beneficial genes that can be utilized in the genetic improvement of peanut (Arachis hypogaea L. 2n = 4x = 40, genome AABB). Chromosome engineering is a powerful technique by which these genes… read more here.
Keywords: high resolution; single copy; chromosome; arachis species ... See more keywords
Analysis of the Complete Plastomes of 31 Species of Hoya Group: Insights Into Their Comparative Genomics and Phylogenetic Relationships
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2021.814833
Abstract: Hoya is a genus in Apocynaceae-Asclepiadoideae, known for its showy wax flowers, making it a popular ornamental plant. However, phylogenetic relationships among most Hoya species are not yet fully resolved. In this study, we sequenced… read more here.
Keywords: analysis complete; phylogenetic relationships; single copy; hoya group ... See more keywords
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.876779
Abstract: We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy ortholog (BUSCO) genes extracted from genomic and transcriptomic datasets.… read more here.
Keywords: genes 1375; sister; busco genes; using 602 ... See more keywords
Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.929352
Abstract: Background Plant chloroplast DNA (cpDNA) typically has a circular structure, including a large single-copy region (LSC), a small single-copy region (SSC) and two inverted repeats (IR1 and IR2). The organization of these four elementary regions… read more here.
Keywords: chloroplast; region; ssc; copy region ... See more keywords