Using the small subunit of nuclear ribosomal DNA to reveal the phylogenetic position of the plerocercoid larvae of Spirometra tapeworms.
Sign Up to like & getrecommendations! Published in 2017 at "Experimental parasitology"
DOI: 10.1016/j.exppara.2017.01.006
Abstract: Although medically important, the systematics of Spirometra and the taxonomic position of S. erinaceieuropaei remain unclear. In this study, the 18S rDNA gene of S. erinaceieuropaei sparganum from naturally infected frogs caught in 14 geographical locations of… read more here.
Keywords: 18s rdna; phylogenetic position; spirometra; position ... See more keywords
AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology
Sign Up to like & getrecommendations! Published in 2021 at "GigaScience"
DOI: 10.1093/gigascience/giab006
Abstract: Abstract Background Advances in high-throughput sequencing accessibility have democratized small subunit ribosomal RNA gene sequence data collection, coincident with an increasing availability of computational tools for sequence data processing, multivariate statistics, and data visualization. However,… read more here.
Keywords: ribosomal rna; analysis; ecology; small subunit ... See more keywords
The small subunit of Rubisco and its potential as an engineering target
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Experimental Botany"
DOI: 10.1093/jxb/erac309
Abstract: Abstract Rubisco catalyses the first rate-limiting step in CO2 fixation and is responsible for the vast majority of organic carbon present in the biosphere. The function and regulation of Rubisco remain an important research topic… read more here.
Keywords: small subunit; engineering target; rubisco;
Modeling the ribosomal small subunit dynamic in Saccharomyces cerevisiae based on TCP-seq data
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac021
Abstract: Abstract Translation Complex Profile Sequencing (TCP-seq), a protocol that was developed and implemented on Saccharomyces cerevisiae, provides the footprints of the small subunit (SSU) of the ribosome (with additional factors) across the entire transcriptome of… read more here.
Keywords: seq data; based tcp; seq; tcp seq ... See more keywords
EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates
Sign Up to like & getrecommendations! Published in 2018 at "Environmental Microbiology"
DOI: 10.1111/1462-2920.14264
Abstract: High-throughput sequencing (HTS) surveys, among the most common approaches currently used in environmental microbiology, require reliable reference databases to be correctly interpreted. The EukRef Initiative (eukref.org) is a community effort to manually screen available small… read more here.
Keywords: gene sequences; phylogeny based; microbiology; database ... See more keywords
Evolution of increased complexity and specificity at the dawn of form I Rubiscos
Sign Up to like & getrecommendations! Published in 2022 at "Science"
DOI: 10.1126/science.abq1416
Abstract: The evolution of ribulose-1,5-bisphosphate carboxylase/oxygenases (Rubiscos) that discriminate strongly between their substrate carbon dioxide and the undesired side substrate dioxygen was an important event for photosynthetic organisms adapting to an oxygenated environment. We use ancestral… read more here.
Keywords: carbon; form rubiscos; subunit; specificity ... See more keywords
Aim23p Interacts with the Yeast Mitochondrial Ribosomal Small Subunit
Sign Up to like & getrecommendations! Published in 2019 at "Biochemistry (Moscow)"
DOI: 10.1134/s000629791901005x
Abstract: Protein synthesis in mitochondria is generally organized in a bacterial-like manner but, at the same time, possesses several unique traits. Translation initiation in mitochondria is regulated by two protein factors, mtIF2 and mtIF3. Previously we… read more here.
Keywords: small subunit; yeast mitochondrial; interacts yeast; mitochondrial ribosomal ... See more keywords
The Universally Conserved Nucleotides of the Small Subunit Ribosomal RNAs.
Sign Up to like & getrecommendations! Published in 2022 at "RNA"
DOI: 10.1261/rna.079019.121
Abstract: The ribosomal RNAs, along with their substrates the transfer RNAs, contain the most highly conserved nucleotides in all of biology. We have assembled a database containing the aligned sequences of the rRNAs from the small… read more here.
Keywords: universally conserved; nucleotides small; ribosomal rnas; conserved nucleotides ... See more keywords
Interactions between the mRNA and Rps3/uS3 at the entry tunnel of the ribosomal small subunit are important for no-go decay
Sign Up to like & getrecommendations! Published in 2018 at "PLoS Genetics"
DOI: 10.1371/journal.pgen.1007818
Abstract: No-go Decay (NGD) is a process that has evolved to deal with stalled ribosomes resulting from structural blocks or aberrant mRNAs. The process is distinguished by an endonucleolytic cleavage prior to degradation of the transcript.… read more here.
Keywords: entry tunnel; decay; small subunit; cleavage ... See more keywords
Improved 18S small subunit rDNA primers for problematic nematode amplification.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of nematology"
DOI: 10.21307/jofnem-2018-051
Abstract: The 18S small subunit (SSU) ribosomal DNA sequence is one of the most useful molecular loci for identification and phylogeny reconstruction of agriculturally important nematodes. Various pairs of universal primers have been developed in the… read more here.
Keywords: problematic nematode; agriculturally important; primers developed; small subunit ... See more keywords
Characterizing the Human Mycobiota: A Comparison of Small Subunit rRNA, ITS1, ITS2, and Large Subunit rRNA Genomic Targets
Sign Up to like & getrecommendations! Published in 2018 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2018.02208
Abstract: Interest in the human microbiome has increased dramatically in the last decade. However, much of this research has focused on bacteria, while the composition and roles of their fungal counterparts remain less understood. Furthermore, a… read more here.
Keywords: subunit rrna; small subunit; its1 its2; subunit ... See more keywords