Profiling of runs of homozygosity from whole-genome sequence data in Japanese biobank
Sign Up to like & getrecommendations! Published in 2025 at "Journal of Human Genetics"
DOI: 10.1038/s10038-025-01331-3
Abstract: Runs of homozygosity (ROHs) are widely observed across the genomes of various species and have been reported to be associated with many traits and common diseases, as well as rare recessive diseases, in human populations.… read more here.
Keywords: array data; profiling runs; snp array; whole genome ... See more keywords
Modeling SNP array ascertainment with Approximate Bayesian Computation for demographic inference
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-28539-y
Abstract: Single nucleotide polymorphisms (SNPs) in commercial arrays have often been discovered in a small number of samples from selected populations. This ascertainment skews patterns of nucleotide diversity and affects population genetic inferences. We propose a… read more here.
Keywords: snp array; demographic inference; bayesian computation; approximate bayesian ... See more keywords
What Is the Clinical Utility of Repeat SNP Array Testing in the Follow-up of Myeloid Neoplasms?: A Retrospective Analysis of 44 Patients With Serial SNP Arrays
Sign Up to like & getrecommendations! Published in 2017 at "American Journal of Clinical Pathology"
DOI: 10.1093/ajcp/aqx003
Abstract: Objectives Single-nucleotide polymorphism (SNP) arrays have been shown to identify cytogenetic abnormalities in myeloid neoplasms that may be missed by metaphase cytogenetics alone at initial diagnosis. This study examines the utility of serial SNP arrays… read more here.
Keywords: snp array; myeloid neoplasms; snp arrays; serial snp ... See more keywords
Genetic architecture of cherry leaf spot (Blumeriella jaapii) resistance in sour cherry (Prunus cerasus L.) uncovered by QTL analyses in a biparental population genotyped with the 6 + 9 K SNP array
Sign Up to like & getrecommendations! Published in 2025 at "Horticulture Research"
DOI: 10.1093/hr/uhaf035
Abstract: Abstract Sour cherry (Prunus cerasus L.) is an economically significant species in the Rosaceae family. Hitherto, there had been limited genetic and genomic resources to elucidate important horticultural traits in this species mainly because of… read more here.
Keywords: prunus; cherry; resistance; snp array ... See more keywords
Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry
Sign Up to like & getrecommendations! Published in 2022 at "PLOS ONE"
DOI: 10.1101/2022.07.30.502127
Abstract: Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material. SNP arrays have become the preferred platform to provide genome-wide genetic profiles for… read more here.
Keywords: snp array; apple; cherry; locus ... See more keywords
genomeprofile: Unveiling the genomic profile for livestock breeding through comprehensive SNP array-based genotyping.
Sign Up to like & getrecommendations! Published in 2024 at "Animal genetics"
DOI: 10.1111/age.13466
Abstract: In livestock breeding, single nucleotide polymorphism arrays have become a cornerstone of modern livestock breeding. SNP arrays facilitate the identification of genetic markers linked to economically important traits and provide a powerful tool for predicting… read more here.
Keywords: array based; livestock breeding; snp array;
SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array
Sign Up to like & getrecommendations! Published in 2023 at "Evolutionary Applications"
DOI: 10.1111/eva.13552
Abstract: Blue mussels from the genus Mytilus are an abundant component of the benthic community, found in the high latitude habitats. These foundation species are relevant to the aquaculture industry, with over 2 million tonnes produced… read more here.
Keywords: snp array; density snp; medium density; mussel ... See more keywords
Comprehensive Study of Chromosomal Copy Number Variations and Genomic Variations Predicting Overall Survival in Myelodysplastic Syndromes
Sign Up to like & getrecommendations! Published in 2024 at "Oncology"
DOI: 10.1159/000536446
Abstract: Abstract Introduction: Myelodysplastic syndrome (MDS) is a heterogeneous disease characterized by cytopenia, marrow dysplasia and has a propensity to develop into acute myeloid leukemia. The disease progression is majorly affected by genetic defects. However, about… read more here.
Keywords: disease; snp array; cgh snp; mds ... See more keywords
Optical Mapping, a Promising Alternative to Gold Standard Cytogenetic Approaches in Acute Lymphoblastic Leukemias: A Blind Comparison on 10 Patients
Sign Up to like & getrecommendations! Published in 2020 at "Blood"
DOI: 10.1182/blood-2020-136257
Abstract: Acute lymphoblastic leukemias (ALL) are characterized by a large number of genetic abnormalities of prognostic and theranostic interest. Their detection requires the use of several conventional and molecular cytogenetic techniques in order to establish the… read more here.
Keywords: standard techniques; snp array; mapping; operator ... See more keywords
Challenging Conventional Diagnostic Methods By Comprehensive Molecular Diagnostics: Results of a Nationwide Prospective Comparison in Children with Acute Lymphoblastic Leukemia
Sign Up to like & getrecommendations! Published in 2024 at "Blood"
DOI: 10.1182/blood-2024-193387
Abstract: Background and aims Treatment stratification in pediatric acute lymphoblastic leukemia (ALL) is, besides clinical parameters, guided by (cyto)genetic aberrations. These aberrations include a variety of gene fusions, aneuploidy groups, and copy number alterations (CNA), requiring… read more here.
Keywords: acute lymphoblastic; fusion; rna sequencing; snp array ... See more keywords
Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications
Sign Up to like & getrecommendations! Published in 2017 at "Rice"
DOI: 10.1186/s12284-017-0181-2
Abstract: BackgroundFixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times. A 6 K SNP array represents a cost-benefit… read more here.
Keywords: snp array; genetics; rice; snp markers ... See more keywords