Species trees from consensus single nucleotide polymorphism (SNP) data: Testing phylogenetic approaches with simulated and empirical data.
Sign Up to like & getrecommendations! Published in 2017 at "Molecular phylogenetics and evolution"
DOI: 10.1016/j.ympev.2017.07.018
Abstract: Datasets of hundreds or thousands of SNPs (Single Nucleotide Polymorphisms) from multiple individuals per species are increasingly used to study population structure, species delimitation and shallow phylogenetics. The principal software tool to infer species or… read more here.
Keywords: snp data; analysis; simulated empirical; topology ... See more keywords
Speciation in Coastal Basins Driven by Staggered Headwater Captures: Dispersal of a Species Complex, Leporinus bahiensis, as Revealed by Genome-wide SNP Data.
Sign Up to like & getrecommendations! Published in 2023 at "Systematic biology"
DOI: 10.1093/sysbio/syad034
Abstract: Past sea level changes and geological instability along watershed boundaries have largely influenced fish distribution across coastal basins, either by dispersal via palaeodrainages now submerged or by headwater captures, respectively. Accordingly, the South American Atlantic… read more here.
Keywords: bahiensis; genome wide; headwater captures; snp data ... See more keywords
An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern
Sign Up to like & getrecommendations! Published in 2020 at "BMC Genomics"
DOI: 10.1186/s12864-020-06783-9
Abstract: Background Use of genomic tools to characterize wildlife populations has increased in recent years. In the past, genetic characterization has been accomplished with more traditional genetic tools (e.g., microsatellites). The explosion of genomic methods and… read more here.
Keywords: species conservation; snp data; population genetic; microsatellite snp ... See more keywords
Inferring sex-specific demographic history from SNP data
Sign Up to like & getrecommendations! Published in 2018 at "PLoS Genetics"
DOI: 10.1371/journal.pgen.1007191
Abstract: The relative female and male contributions to demography are of great importance to better understand the history and dynamics of populations. While earlier studies relied on uniparental markers to investigate sex-specific questions, the increasing amount… read more here.
Keywords: snp data; sex specific; history; sex ... See more keywords