Moving far, staying close: red fox dispersal patterns revealed by SNP genotyping
Sign Up to like & getrecommendations! Published in 2021 at "Conservation Genetics"
DOI: 10.1007/s10592-021-01332-7
Abstract: The genetic structure of a population can provide important insights into animal movements at varying geographical scales. Individual and social behaviors, such as philopatry and dispersal, affect patterns of relatedness, age and sex structure, shaping… read more here.
Keywords: genetic structure; dispersal patterns; red foxes; dispersal ... See more keywords
OR20 De novo generation of MHC haplotypes using single molecule sequencing
Sign Up to like & getrecommendations! Published in 2017 at "Human Immunology"
DOI: 10.1016/j.humimm.2017.06.026
Abstract: Aim Utilizing a previously developed long-fragment DNA capture methodology, PacBio single molecule real-time (SMRT) sequencing and a custom de novo assembly analysis pipeline, we aim to resolve the long-range, fully phased MHC haplotypes for a… read more here.
Keywords: single molecule; snp genotyping; phased snp; mhc ... See more keywords
A multisite SNP genotyping and macrolide susceptibility gene method for Mycoplasmapneumoniae based on MALDI-TOF MS
Sign Up to like & getrecommendations! Published in 2021 at "iScience"
DOI: 10.1016/j.isci.2021.102447
Abstract: Summary In this study, a multisite SNP genotyping and macrolide (ML) susceptibility gene test method for Mycoplasma pneumoniae (M. pneumoniae) was developed based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). The detection limit… read more here.
Keywords: susceptibility; multisite snp; method; snp genotyping ... See more keywords
Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/s41598-017-10647-w
Abstract: Noninvasively collected samples are a common source of DNA in wildlife genetic studies. Currently, single nucleotide polymorphism (SNP) genotyping using microfluidic arrays is emerging as an easy-to-use and cost-effective methodology. Here we assessed the performance… read more here.
Keywords: noninvasively collected; wildlife; microfluidic arrays; snp genotyping ... See more keywords
The development of a novel SNP genotyping assay to differentiate cacao clones
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Reports"
DOI: 10.1038/s41598-019-45884-8
Abstract: In this study, a double-mismatch allele-specific (DMAS) qPCR SNP genotyping method has been designed, tested and validated specifically for cacao, using 65 well annotated international cacao reference accessions retrieved from the Center for Forestry Research… read more here.
Keywords: genotyping assay; snp genotyping; novel snp; development novel ... See more keywords
Evolutionary Computation-Based Memetic Algorithm Against Genetic Algorithm to Improve PCR-RFLP Assay Primers of SNP Genotyping
Sign Up to like & getrecommendations! Published in 2018 at "IEEE Access"
DOI: 10.1109/access.2018.2884189
Abstract: A genetic algorithm (GA) combines the restriction enzyme mining core of single nucleotide polymorphism (SNP) restriction fragment length polymorphism (RFLP) to design polymerase chain reaction (PCR)-RFLP primer pairs for SNP-based genotyping with feasible estimated GA… read more here.
Keywords: rflp assay; pcr rflp; primers snp; snp genotyping ... See more keywords
Development of a 135K SNP genotyping array for Actinidia arguta and its applications for genetic mapping and QTL analysis in kiwifruit
Sign Up to like & getrecommendations! Published in 2022 at "Plant Biotechnology Journal"
DOI: 10.1111/pbi.13958
Abstract: Summary Kiwifruit (Actinidia spp) is a woody, perennial and deciduous vine. In this genus, there are multiple ploidy levels but the main cultivated cultivars are polyploid. Despite the availability of many genomic resources in kiwifruit,… read more here.
Keywords: kiwifruit; snp genotyping; genotyping array; qtl analysis ... See more keywords
In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping
Sign Up to like & getrecommendations! Published in 2017 at "BMC Genomics"
DOI: 10.1186/s12864-017-3805-4
Abstract: BackgroundCommon bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete… read more here.
Keywords: gene; common bean; snp genotyping; gene pools ... See more keywords
Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
Sign Up to like & getrecommendations! Published in 2019 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2019.00361
Abstract: Alpacas are one of four South American Camelid species living in the highlands of the Andes. Production of alpaca fiber contributes to the economy of the region and the livelihood of many rural families. Fiber… read more here.
Keywords: snps; evaluation snp; genotyping beadchip; genotyping alpacas ... See more keywords
Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2020.605934
Abstract: The Italian grape germplasm is characterized by a high level of richness in terms of varieties number, with nearly 600 wine grape varieties listed in the Italian National Register of Grapevine Varieties and with a… read more here.
Keywords: parentage; snp genotyping; grapevine varieties; italian grapevine ... See more keywords
Development of STARP Marker Platform for Flexible SNP Genotyping in Sugarbeet
Sign Up to like & getrecommendations! Published in 2023 at "Agronomy"
DOI: 10.3390/agronomy13051359
Abstract: Single nucleotide polymorphisms (SNPs) have been widely used for gene identification. Allelic discrimination for an individual SNP with high reliability and flexibility is critical for the accurate detection of beneficial genes linked to specific SNP… read more here.
Keywords: development starp; starp; starp marker; snp genotyping ... See more keywords