Sequence analysis of coat protein and molecular profiling of sunflower necrosis virus (SNV) strains from Indian subcontinent
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Plant Biochemistry and Biotechnology"
DOI: 10.1007/s13562-017-0412-z
Abstract: Sunflower is one of the leading edible oilseed crops of the world and is an important oil-producing crop of India. The sunflower necrosis disease caused by sunflower necrosis virus (SNV) has become a major hurdle… read more here.
Keywords: analysis; sunflower necrosis; snv strains; snv ... See more keywords
The genomic landscape across 474 surgically accessible epileptogenic human brain lesions
Sign Up to like & getrecommendations! Published in 2022 at "Brain"
DOI: 10.1093/brain/awac376
Abstract: Understanding the exact molecular mechanisms involved in the etiology of epileptogenic pathologies with or without tumor activity is essential for improving treatment of drug-resistant focal epilepsy. Here, we characterize the landscape of somatic genetic variants… read more here.
Keywords: etiology; brain; brain lesions; epilepsy ... See more keywords
Advantages of analysing both pairwise SNV-distance and differing SNVs between Mycobacterium tuberculosis isolates for recurrent tuberculosis cause determination
Sign Up to like & getrecommendations! Published in 2023 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000956
Abstract: Endogenous reactivation and exogenous reinfection are two possible causes of recurrent tuberculosis (TB). However, in some cases, precise cause determination can be challenging. In this study, we used whole genome sequencing to determine pairwise SNV… read more here.
Keywords: episode; tuberculosis; distance; cause ... See more keywords
GeDi: applying suffix arrays to increase the repertoire of detectable SNVs in tumour genomes
Sign Up to like & getrecommendations! Published in 2020 at "BMC Bioinformatics"
DOI: 10.1186/s12859-020-3367-3
Abstract: Background Current popular variant calling pipelines rely on the mapping coordinates of each input read to a reference genome in order to detect variants. Since reads deriving from variant loci that diverge in sequence substantially… read more here.
Keywords: mapping coordinates; suffix; repertoire detectable; snv calling ... See more keywords