Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Sign Up to like & getrecommendations! Published in 2019 at "Ecology and Evolution"
DOI: 10.1002/ece3.4814
Abstract: Abstract High‐throughput sequencing has the potential to describe biological communities with high efficiency yet comprehensive assessment of diversity with species‐level resolution remains one of the most challenging aspects of metabarcoding studies. We investigated the utility… read more here.
Keywords: sequence databases; reference; reference sequence; taxonomic assignments ... See more keywords
Estimates of species-level tolerance of urban habitat in North American birds.
Sign Up to like & getrecommendations! Published in 2022 at "Ecology"
DOI: 10.1002/ecy.3821
Abstract: Species vary in their responses to urban habitat - most species avoid these environments, while others tolerate or even thrive in them. To better characterize the extent to which species vary in their responses to… read more here.
Keywords: species level; tolerance urban; urban habitat; tolerance ... See more keywords
Comparative community structure of archaea in rumen of buffaloes and cattle.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of the science of food and agriculture"
DOI: 10.1002/jsfa.8177
Abstract: BACKGROUND Detailed knowledge of the community structure of methanogens is essential for amelioration of methane emission from livestock species. Several studies have indicated that predominant methanogens of buffalo rumen are different from those in cattle.… read more here.
Keywords: archaea rumen; community structure; species level; cattle buffaloes ... See more keywords
Rapid species level identification of fish eggs by proteome fingerprinting using MALDI-TOF MS.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of proteomics"
DOI: 10.1016/j.jprot.2020.103993
Abstract: Quantifying spawning biomass of commercially relevant fish species is important to generate fishing quotas. This will mostly rely on the annual or daily production of fish eggs. However, these have to be identified precisely to… read more here.
Keywords: maldi tof; identification fish; fish eggs; identification ... See more keywords
The in situ bacterial production of fluorescent organic matter; an investigation at a species level.
Sign Up to like & getrecommendations! Published in 2017 at "Water research"
DOI: 10.1016/j.watres.2017.08.040
Abstract: Aquatic dissolved organic matter (DOM) plays an essential role in biogeochemical cycling and transport of organic matter throughout the hydrological continuum. To characterise microbially-derived organic matter (OM) from common environmental microorganisms (Escherichia coli, Bacillus subtilis… read more here.
Keywords: production; fluorescent organic; matter; organic matter ... See more keywords
Towards the biogeography of prokaryotic genes.
Sign Up to like & getrecommendations! Published in 2021 at "Nature"
DOI: 10.1038/s41586-021-04233-4
Abstract: Microbial genes encode the majority of the functional repertoire of life on earth. However, despite increasing efforts in metagenomic sequencing of various habitats1-3, little is known about the distribution of genes across the global biosphere,… read more here.
Keywords: level genes; majority; biogeography prokaryotic; prokaryotic genes ... See more keywords
Development of quantitation method for glycated aminophospholipids at the molecular species level in powdered milk and powdered buttermilk
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-27010-2
Abstract: The Maillard reaction is a nonenzymatic glycation reaction between a reducing sugar and a free amino group, known to naturally occur during heat processing of food. In this study, we especially focused on phosphatidylethanolamine (PE)-linked… read more here.
Keywords: milk; mode; development quantitation; powdered milk ... See more keywords
Species-level classification of mangrove forest using AVIRIS-NG hyperspectral imagery
Sign Up to like & getrecommendations! Published in 2023 at "Remote Sensing Letters"
DOI: 10.1080/2150704x.2023.2215945
Abstract: ABSTRACT Species-level classification of mangroves provides important inputs for conservation, rehabilitation and understanding of ecosystem functions. The hyperspectral sensor, Airborne Visible InfraRed Imaging Spectrometer-New Generation (AVIRIS-NG), holds promises for species-level discrimination by virtue of its… read more here.
Keywords: level classification; species level; classification mangrove; excoecaria agallocha ... See more keywords
CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz790
Abstract: MOTIVATION Microbiome analyses of clinical samples with low microbial biomass are challenging because of the very small quantities of microbial DNA relative to the human host, ubiquitous contaminating DNA in sequencing experiments, and the large… read more here.
Keywords: csmd computational; pipeline; subtraction based; computational subtraction ... See more keywords
Multi-centric evaluation of the online MSI platform for the identification of cryptic and rare species of Aspergillus by MALDI-TOF.
Sign Up to like & getrecommendations! Published in 2019 at "Medical mycology"
DOI: 10.1093/mmy/myz004
Abstract: The taxonomy of Aspergillus species has recently been revolutionized with the introduction of cryptic species and section concepts. However, their species-level identification in routine laboratories remains a challenge. The aim of this study was to… read more here.
Keywords: msi; cryptic species; identification; section ... See more keywords
Whole Genome Resources and Species-level Taxonomic Validation of 89 Plant Pathogenic Xanthomonas Strains Isolated from Various Host Plants.
Sign Up to like & getrecommendations! Published in 2022 at "Plant disease"
DOI: 10.1094/pdis-11-21-2498-sc
Abstract: Bacterial spot disease (BSD) caused by Xanthomonas species is a global threat to tomato and pepper plants. A recent classification of these pathogens indicated the need for a diverse dataset of whole-genome resources. We report… read more here.
Keywords: xanthomonas strains; species level; strains previously; strains isolated ... See more keywords