Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Sign Up to like & getrecommendations! Published in 2019 at "Ecology and Evolution"
DOI: 10.1002/ece3.4814
Abstract: Abstract High‐throughput sequencing has the potential to describe biological communities with high efficiency yet comprehensive assessment of diversity with species‐level resolution remains one of the most challenging aspects of metabarcoding studies. We investigated the utility… read more here.
Keywords: sequence databases; reference; reference sequence; taxonomic assignments ... See more keywords
Estimates of species-level tolerance of urban habitat in North American birds.
Sign Up to like & getrecommendations! Published in 2022 at "Ecology"
DOI: 10.1002/ecy.3821
Abstract: Species vary in their responses to urban habitat - most species avoid these environments, while others tolerate or even thrive in them. To better characterize the extent to which species vary in their responses to… read more here.
Keywords: species level; tolerance urban; urban habitat; tolerance ... See more keywords
Proteomic analysis resulting in species‐level identification of recently diverged North American arvicoline rodents
Sign Up to like & getrecommendations! Published in 2025 at "Journal of Quaternary Science"
DOI: 10.1002/jqs.70011
Abstract: North American arvicoline rodents have long been considered to have high biogeographic, biochronologic, and paleoecological value. They provide relative dating of faunal assemblages when absolute dating is not possible and contribute to paleobiome characterization. However,… read more here.
Keywords: arvicoline; american arvicoline; species level; north american ... See more keywords
Comparative community structure of archaea in rumen of buffaloes and cattle.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of the science of food and agriculture"
DOI: 10.1002/jsfa.8177
Abstract: BACKGROUND Detailed knowledge of the community structure of methanogens is essential for amelioration of methane emission from livestock species. Several studies have indicated that predominant methanogens of buffalo rumen are different from those in cattle.… read more here.
Keywords: archaea rumen; community structure; species level; cattle buffaloes ... See more keywords
Predicting the invasiveness of alpine newts in the UK
Sign Up to like & getrecommendations! Published in 2025 at "Biological Invasions"
DOI: 10.1007/s10530-025-03543-2
Abstract: Predicting invasion risk to novel environments is essential for risk management and conservation decision making but the evolutionary lineage at which to make these predictions is often unclear. Here we predict the current suitability across… read more here.
Keywords: alpine newt; lineage; species level; predicting invasiveness ... See more keywords
Rapid species level identification of fish eggs by proteome fingerprinting using MALDI-TOF MS.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of proteomics"
DOI: 10.1016/j.jprot.2020.103993
Abstract: Quantifying spawning biomass of commercially relevant fish species is important to generate fishing quotas. This will mostly rely on the annual or daily production of fish eggs. However, these have to be identified precisely to… read more here.
Keywords: maldi tof; identification fish; fish eggs; identification ... See more keywords
The in situ bacterial production of fluorescent organic matter; an investigation at a species level.
Sign Up to like & getrecommendations! Published in 2017 at "Water research"
DOI: 10.1016/j.watres.2017.08.040
Abstract: Aquatic dissolved organic matter (DOM) plays an essential role in biogeochemical cycling and transport of organic matter throughout the hydrological continuum. To characterise microbially-derived organic matter (OM) from common environmental microorganisms (Escherichia coli, Bacillus subtilis… read more here.
Keywords: production; fluorescent organic; matter; organic matter ... See more keywords
First Species-Level Assessment Reveals Extinction Risk in Mesoamerica
Sign Up to like & getrecommendations! Published in 2025 at "Eos"
DOI: 10.1029/2025eo250273
Abstract: Forty-six percent of tree species in Mesoamerica are threatened with extinction. Researchers hope a new regional study will inform targeted conservation strategies. read more here.
Keywords: reveals extinction; level assessment; species level; first species ... See more keywords
Towards the biogeography of prokaryotic genes.
Sign Up to like & getrecommendations! Published in 2021 at "Nature"
DOI: 10.1038/s41586-021-04233-4
Abstract: Microbial genes encode the majority of the functional repertoire of life on earth. However, despite increasing efforts in metagenomic sequencing of various habitats1-3, little is known about the distribution of genes across the global biosphere,… read more here.
Keywords: level genes; majority; biogeography prokaryotic; prokaryotic genes ... See more keywords
Rapid species-level metagenome profiling and containment estimation with sylph
Sign Up to like & getrecommendations! Published in 2024 at "Nature Biotechnology"
DOI: 10.1038/s41587-024-02412-y
Abstract: Profiling metagenomes against databases allows for the detection and quantification of microorganisms, even at low abundances where assembly is not possible. We introduce sylph, a species-level metagenome profiler that estimates genome-to-metagenome containment average nucleotide identity… read more here.
Keywords: level metagenome; ani; species level; sylph ... See more keywords
Development of quantitation method for glycated aminophospholipids at the molecular species level in powdered milk and powdered buttermilk
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-27010-2
Abstract: The Maillard reaction is a nonenzymatic glycation reaction between a reducing sugar and a free amino group, known to naturally occur during heat processing of food. In this study, we especially focused on phosphatidylethanolamine (PE)-linked… read more here.
Keywords: milk; mode; development quantitation; powdered milk ... See more keywords