A Phylogenetic Framework to Simulate Synthetic Inter-species RNA-Seq Data.
Sign Up to like & getrecommendations! Published in 2022 at "Molecular biology and evolution"
DOI: 10.1093/molbev/msac269
Abstract: Inter-species RNA-Seq datasets are increasingly common, and have the potential to answer new questions about the evolution of gene expression. Single species differential expression analysis is now a well studied problem that benefits from sound… read more here.
Keywords: inter species; rna seq; framework; expression ... See more keywords
Optimized splitting of mixed-species RNA sequencing data
Sign Up to like & getrecommendations! Published in 2022 at "Journal of bioinformatics and computational biology"
DOI: 10.1142/s0219720022500019
Abstract: Gene expression studies using xenograft transplants or co-culture systems, usually with mixed human and mouse cells, have proven to be valuable to uncover cellular dynamics during development or in disease models. However, the mRNA sequence… read more here.
Keywords: rna sequencing; mixed species; sequencing data; species rna ... See more keywords