LAUSR

refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.

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1 Published in 2019 at "Journal of molecular biology"

DOI: 10.1016/j.jmb.2019.04.045

Abstract: Transcription starts at genomic positions called transcription start sites (TSSs), producing RNAs, and is mainly regulated by genomic elements and transcription factors binding around these TSSs. This indicates that TSSs may be a better unit… read more here.

Keywords: transcription; human mouse; reference; start sites ... See more keywords

Computational annotation of miRNA transcription start sites

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0 Published in 2021 at "Briefings in Bioinformatics"

DOI: 10.1093/bib/bbz178

Abstract: Abstract Motivation MicroRNAs (miRNAs) are small noncoding RNAs that play important roles in gene regulation and phenotype development. The identification of miRNA transcription start sites (TSSs) is critical to understand the functional roles of miRNA… read more here.

Keywords: transcription; annotation; start sites; mirna tsss ... See more keywords

Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites.

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1 Published in 2019 at "Genome research"

DOI: 10.1101/gr.240861.118

Abstract: Retroelement integration into host genomes affects both genome structure and function. A goal of a considerable number of investigations is to elucidate host features that influence insertion site selection. The retrotransposon Ty3 of Saccharomyces cerevisiae… read more here.

Keywords: targeting frequency; frequency; rna polymerase; start sites ... See more keywords

Novel Transformer Networks for Improved Sequence Labeling in genomics

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2 Published in 2022 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"

DOI: 10.1109/tcbb.2020.3035021

Abstract: In genomics, a wide range of machine learning methodologies have been investigated to annotate biological sequences for positions of interest such as transcription start sites, translation initiation sites, methylation sites, splice sites and promoter start… read more here.

Keywords: start sites; sequence labeling; sequence; novel transformer ... See more keywords

Analysis of Viral Promoters for Transgene Expression and of the Effect of 5′-UTRs on Alternative Translational Start Sites in Chlamydomonas

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2 Published in 2023 at "Genes"

DOI: 10.3390/genes14040948

Abstract: Microalgae biotechnology has the potential to produce high quality bioproducts in a sustainable manner. Here, Chlamydomonas reinhardtii has shown great potential as a host for biotechnological exploitation. However, low expression of nuclear transgenes is still… read more here.

Keywords: start sites; translational start; expression; transgene expression ... See more keywords