APC-PC Combined Scheme in Gilbert Two State Model: Proposal and Study
Sign Up to like & getrecommendations! Published in 2017 at "Journal of The Institution of Engineers (India): Series B"
DOI: 10.1007/s40031-016-0269-x
Abstract: In an automatic repeat request (ARQ) scheme, a packet is retransmitted if it gets corrupted due to transmission errors caused by the channel. However, an erroneous packet may contain both erroneous bits and correct bits and… read more here.
Keywords: bit; gilbert two; state model; packet ... See more keywords
The optimal rate for resolving a near-polytomy in a phylogeny.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of theoretical biology"
DOI: 10.1016/j.jtbi.2017.02.037
Abstract: The reconstruction of phylogenetic trees from discrete character data typically relies on models that assume the characters evolve under a continuous-time Markov process operating at some overall rate λ. When λ is too high or… read more here.
Keywords: optimal rate; two state; rate; state model ... See more keywords
Structural Heterogeneity of Intermediate States Facilitates CRIPT Peptide Binding to the PDZ3 Domain: Insights from Molecular Dynamics and Markov State Model Analysis.
Sign Up to like & getrecommendations! Published in 2025 at "Journal of chemical theory and computation"
DOI: 10.1021/acs.jctc.4c01308
Abstract: Intrinsically disordered proteins (IDPs), characterized by a lack of defined tertiary structure, are ubiquitous and indispensable components of cellular machinery. These proteins participate in a diverse array of biological processes, often undergoing conformational transitions upon… read more here.
Keywords: cript peptide; structural heterogeneity; state model; model analysis ... See more keywords
Hierarchical Markov State Model Building to Describe Molecular Processes.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of chemical theory and computation"
DOI: 10.1021/acs.jctc.9b00955
Abstract: Markov state models can describe ensembles of pathways via kinetic networks but are difficult to create when large free energy barriers limit unbiased sampling. Chain-of-states simulations allow sampling over large free energy barriers but are… read more here.
Keywords: large free; markov state; markov; state model ... See more keywords
Bean’s critical-state model as a consequence of the circuit model of non-linear resistance
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Applied Physics"
DOI: 10.1063/1.5084152
Abstract: Bean’s critical-state model has served as the foundation for computing the heat generated by the time-varying magnetic field or current in type-II superconductors. Two key features of the Bean model are (i) the current density… read more here.
Keywords: bean model; critical state; circuit model; model ... See more keywords
Elucidating the conformational change of dengue envelope protein using the Markov state model
Sign Up to like & getrecommendations! Published in 2024 at "Molecular Simulation"
DOI: 10.1080/08927022.2024.2387126
Abstract: ABSTRACT Dengue virus, an arbovirus of genus flavivirus, is one of the most prevalent infectious disease causing organisms in the tropical environment leading to numerous deaths every year. The envelope protein plays a crucial role… read more here.
Keywords: dengue envelope; envelope protein; state model; markov state ... See more keywords
Consensus vs. dissensus over the ‘civil state’ model: a key to understanding the diverse outcomes of the Arab Spring in Egypt and Tunisia
Sign Up to like & getrecommendations! Published in 2019 at "British Journal of Middle Eastern Studies"
DOI: 10.1080/13530194.2019.1651631
Abstract: ABSTRACT The ‘Jasmine Revolution’ that toppled Tunisian president Zine al-‘Abidine Ben ‘Ali on 14 January 2011, and the 25 January 2011 uprising that toppled Egyptian President Husni Mubarak had similar characteristics yet different outcomes. While… read more here.
Keywords: state; civil state; arab spring; model ... See more keywords
Building on Dewaele’s (2018) L1 versus LX Dichotomy: The Language-Usage-Identity State Model
Sign Up to like & getrecommendations! Published in 2019 at "Applied Linguistics"
DOI: 10.1093/applin/amz010
Abstract: In this brief contribution, we will summarize the main arguments in Dewaele’s (2018) ‘Why the Dichotomy “L1 versus LX User” is Better than “Native versus Non-native Speaker”’ and discuss our Language-Usage-Identity State Model, showing how… read more here.
Keywords: language usage; state model; versus; identity state ... See more keywords
Zero rules of the Yang Baxter state model for the Kauffman polynomial: A note
Sign Up to like & getrecommendations! Published in 2025 at "Journal of Knot Theory and Its Ramifications"
DOI: 10.1142/s0218216525710014
Abstract: In this brief paper, we provide an interpretation of the “Zero Rules” in the Yang–Baxter state model for the Kauffman polynomials, as described in Kauffman’s textbook “Knots and Physics”. Our presentation includes simple examples to… read more here.
Keywords: model kauffman; yang baxter; rules yang; state model ... See more keywords
Diffusion of molecules through nanopores under confinement: Time-scale bridging and crowding effects via Markov state model
Sign Up to like & getrecommendations! Published in 2022 at "Biomolecular Concepts"
DOI: 10.1515/bmc-2022-0019
Abstract: Abstract Passive transport of molecules through nanopores is characterized by the interaction of molecules with pore internal walls and by a general crowding effect due to the constricted size of the nanopore itself, which limits… read more here.
Keywords: molecules nanopores; transport; state model; crowding effects ... See more keywords
Predicting COVID-19 progression in hospitalized patients in Belgium from a multi-state model
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Medicine"
DOI: 10.3389/fmed.2022.1027674
Abstract: Objectives To adopt a multi-state risk prediction model for critical disease/mortality outcomes among hospitalised COVID-19 patients using nationwide COVID-19 hospital surveillance data in Belgium. Materials and methods Information on 44,659 COVID-19 patients hospitalised between March… read more here.
Keywords: state; state model; multi state; age ... See more keywords