Statistical method scDEED for detecting dubious 2D single-cell embeddings and optimizing t-SNE and UMAP hyperparameters
Sign Up to like & getrecommendations! Published in 2024 at "Nature Communications"
DOI: 10.1038/s41467-024-45891-y
Abstract: Two-dimensional (2D) embedding methods are crucial for single-cell data visualization. Popular methods such as t-distributed stochastic neighbor embedding (t-SNE) and uniform manifold approximation and projection (UMAP) are commonly used for visualizing cell clusters; however, it… read more here.
Keywords: single cell; sne umap; method scdeed; cell ... See more keywords
New statistical method identifies cytokines that distinguish stool microbiomes
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Reports"
DOI: 10.1038/s41598-019-56397-9
Abstract: Regressing an outcome or dependent variable onto a set of input or independent variables allows the analyst to measure associations between the two so that changes in the outcome can be described by and predicted… read more here.
Keywords: method identifies; statistical method; new statistical; model ... See more keywords
An exact statistical method for analyzing co-location on a street network and its computational implementation
Sign Up to like & getrecommendations! Published in 2021 at "International Journal of Geographical Information Science"
DOI: 10.1080/13658816.2021.1976409
Abstract: In many central districts in cities across the world, different types of stores form clusters resulting from the benefits of spatial agglomeration. To precisely analyze co-location relationships in... read more here.
Keywords: location; analyzing location; method analyzing; statistical method ... See more keywords
A statistical method for build orientation determination in additive manufacturing
Sign Up to like & getrecommendations! Published in 2019 at "Rapid Prototyping Journal"
DOI: 10.1108/rpj-04-2018-0102
Abstract: Purpose For part models with complex shape features or freeform shapes, the existing build orientation determination methods may have issues, such as difficulty in defining features and costly computation. To deal with these issues, this… read more here.
Keywords: orientation; orientation determination; statistical method; build orientation ... See more keywords
A Baseline Statistical Method for Robust User-Assisted Multiple Segmentation
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Signal Processing Letters"
DOI: 10.1109/lsp.2022.3154313
Abstract: Recently, several image segmentation methods that welcome and leverage different types of user assistance have been developed. In these methods, the user inputs can be provided by drawing bounding boxes over image objects, drawing scribbles… read more here.
Keywords: baseline statistical; statistical method; user assisted; segmentation ... See more keywords
An Explainable Statistical Method for Seizure Prediction Using Brain Functional Connectivity from EEG
Sign Up to like & getrecommendations! Published in 2022 at "Computational Intelligence and Neuroscience"
DOI: 10.1155/2022/2183562
Abstract: Background Epilepsy is a group of chronic neurological disorders characterized by recurrent and abrupt seizures. The accurate prediction of seizures can reduce the burdens of this disorder. Now, existing studies use brain network features to… read more here.
Keywords: statistical method; prediction; brain; seizure prediction ... See more keywords
A statistical method for the conservative adjustment of false discovery rate (q-value)
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1474-6
Abstract: Backgroundq-value is a widely used statistical method for estimating false discovery rate (FDR), which is a conventional significance measure in the analysis of genome-wide expression data. q-value is a random variable and it may underestimate… read more here.
Keywords: false discovery; statistical method; method; value ... See more keywords
Statistical method to compare massive parallel sequencing pipelines
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1552-9
Abstract: BackgroundToday, sequencing is frequently carried out by Massive Parallel Sequencing (MPS) that cuts drastically sequencing time and expenses. Nevertheless, Sanger sequencing remains the main validation method to confirm the presence of variants. The analysis of… read more here.
Keywords: method compare; statistical method; method; parallel sequencing ... See more keywords
A shrinkage-based statistical method for testing group mean differences in quantitative bottom-up proteomics
Sign Up to like & getrecommendations! Published in 2025 at "BMC Bioinformatics"
DOI: 10.1186/s12859-025-06275-1
Abstract: In bottom-up proteomics using data-independent acquisition mass spectrometry (DIA-MS), quantitative measurements are obtained following multiple steps of protein fragmentation and ionization, which introduces cumulative errors and impairs the effectiveness of classical statistical methods. This study… read more here.
Keywords: method; testing group; statistical method; quantitative bottom ... See more keywords
A novel statistical method for long-term coronavirus modelling
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DOI: 10.12688/f1000research.125924.1
Abstract: Background: Novel coronavirus disease has been recently a concern for worldwide public health. To determine epidemic rate probability at any time in any region of interest, one needs efficient bio-system reliability approach, particularly suitable for… read more here.
Keywords: long term; statistical method; methodology; method ... See more keywords
An improved statistical method to identify chemical-genetic interactions by exploiting concentration-dependence
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DOI: 10.1371/journal.pone.0257911
Abstract: Chemical-genetics (C-G) experiments can be used to identify interactions between inhibitory compounds and bacterial genes, potentially revealing the targets of drugs, or other functionally interacting genes and pathways. C-G experiments involve constructing a library of… read more here.
Keywords: dependence; improved statistical; statistical method; drug ... See more keywords