LAUSR

About LAUSR
Donate
Contact Us

Follow us:

You are not signed in:

Sign Up!


   Articles with "strain level" as a keyword



TaxIt: An iterative computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic single-organism samples.

Sign Up to like & get
recommendations! Published in 2020 at "Journal of proteome research"

DOI: 10.1021/acs.jproteome.9b00714

Abstract: Untargeted accurate strain-level classification of a priori unidentified organisms using tandem mass spectrometry is a challenging task. Reference databases often lack taxonomic depth, limiting peptide assignments to the species level. However, the extension with detailed… read more here.

Keywords: strain level; taxit iterative; classification; level ... See more keywords

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Sign Up to like & get
recommendations! Published in 2019 at "Nature Communications"

DOI: 10.1038/s41467-019-13036-1

Abstract: The 16S rRNA gene has been a mainstay of sequence-based bacterial analysis for decades. However, high-throughput sequencing of the full gene has only recently become a realistic prospect. Here, we use in silico and sequence-based… read more here.

Keywords: analysis; 16s rrna; rrna gene; gene ... See more keywords
Photo by riccardo__oliva from unsplash

Effect of Tension Strain Level on Reinforcement Corrosion

Sign Up to like & get
recommendations! Published in 2018 at "Journal of Materials in Civil Engineering"

DOI: 10.1061/(asce)mt.1943-5533.0002167

Abstract: AbstractReinforcement corrosion is a general problem about the reliability and durability of concrete structures. A lot of research about the issue of reinforcement corrosion has been done; however... read more here.

Keywords: effect tension; tension strain; corrosion; reinforcement corrosion ... See more keywords

Comparison of Mechanical Behaviour of Prototype UFREI and PB-FREI Under Cyclic Loading

Sign Up to like & get
recommendations! Published in 2025 at "Journal of Earthquake Engineering"

DOI: 10.1080/13632469.2025.2459790

Abstract: ABSTRACT An experimental study is carried out on prototype UFREI and PB-FREI to compare their hysteretic responses under combined vertical load and cyclic displacement history. Further, 3D finite element analysis of UFREI and PB-FREI is… read more here.

Keywords: comparison; prototype ufrei; strain level; ufrei frei ... See more keywords

Strain-level analysis of gut-resident pro-inflammatory viridans group Streptococci suppressed by long-term cotrimoxazole prophylaxis among HIV-positive children in Zimbabwe

Sign Up to like & get
recommendations! Published in 2020 at "Gut Microbes"

DOI: 10.1080/19490976.2020.1717299

Abstract: ABSTRACT Antimicrobials have become a mainstay of healthcare in the past century due to their activity against pathogens. More recently, it has become clear that they can also affect health via their impact on the… read more here.

Keywords: gut resident; cotrimoxazole prophylaxis; prophylaxis among; strain level ... See more keywords

Species- and strain-level assessment using rrn long-amplicons suggests donor’s influence on gut microbial transference via fecal transplants in metabolic syndrome subjects

Sign Up to like & get
recommendations! Published in 2022 at "Gut Microbes"

DOI: 10.1080/19490976.2022.2078621

Abstract: Fecal microbiota transplantation (FMT) is currently used for treating Clostridium difficile infection and explored for other clinical applications in experimental trials. However, the effectiveness of this therapy could vary, and partly depend on the donor’s… read more here.

Keywords: gut; microbiota; transference; rrn ... See more keywords

StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities

Sign Up to like & get
recommendations! Published in 2024 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btaf440

Abstract: Background Synthetic microbial communities offer an opportunity to conduct reductionist research in tractable model systems. However, deriving abundances of highly related strains within these communities is currently unreliable. 16S rRNA gene sequencing does not resolve… read more here.

Keywords: level abundances; synthetic microbial; shotgun metagenomic; microbial communities ... See more keywords
Photo from academic.microsoft.com

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

Sign Up to like & get
recommendations! Published in 2017 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkw837

Abstract: Metagenomic characterization of microbial communities has the potential to become a tool to identify pathogens in human samples. However, software tools able to extract strain-level typing information from metagenomic data are needed. Low-throughput molecular typing… read more here.

Keywords: level bacterial; bacterial typing; locus strain; multi locus ... See more keywords

Tracing of streptococcal strains from infant stools across human body sites links site-specific prevalence to adhesins

Sign Up to like & get
recommendations! Published in 2025 at "Applied and Environmental Microbiology"

DOI: 10.1128/aem.00196-25

Abstract: ABSTRACT Streptococci colonize various human body sites, both as commensals and as pathogens. They are early gut colonizers, but we lack strain-level information about the origin and persistence of streptococci in the non-diseased gut. To… read more here.

Keywords: human body; body sites; streptococci; strain level ... See more keywords

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

Sign Up to like & get
recommendations! Published in 2017 at "mSystems"

DOI: 10.1128/msystems.00164-16

Abstract: Early infant exposure is important in the acquisition and ultimate development of a healthy infant microbiome. There is increasing support for the idea that the maternal microbial reservoir is a key route of microbial transmission,… read more here.

Keywords: transmission; vertical transmission; infant microbiome; infant ... See more keywords

Strain-Level Variation and Diverse Host Bacterial Responses in Episymbiotic Saccharibacteria

Sign Up to like & get
recommendations! Published in 2022 at "mSystems"

DOI: 10.1128/msystems.01488-21

Abstract: Candidate phylum radiation (CPR) bacteria comprise a poorly understood phylum that is estimated to encompass ∼26% of all diversity of domain bacteria. Among CPR bacteria, the Saccharibacteria lineage (TM7) is of particular interest, as it… read more here.

Keywords: cpr bacteria; host bacteria; host; strain level ... See more keywords