Analysis of the abundance and diversity of RNA secondary structure elements in RNA viruses using the RNAsselem Python package
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DOI: 10.1038/s41598-024-80240-5
Abstract: Recent advancements in experimental and computational methods for RNA secondary structure detection have revealed the crucial role of RNA structural elements in diverse molecular processes within living cells. It has been demonstrated that the secondary… read more here.
Keywords: structure; python package; secondary structure; structure elements ... See more keywords
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
Sign Up to like & getrecommendations! Published in 2019 at "F1000Research"
DOI: 10.12688/f1000research.18458.2
Abstract: We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a… read more here.
Keywords: structure elements; python library; rna; secondary structure ... See more keywords
RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates
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DOI: 10.3390/genes9080392
Abstract: In this work, we present a computational screen conducted for functional RNA structures, resulting in over 100,000 conserved RNA structure elements found in alignments of mouse (mm10) against 59 other vertebrates. We explicitly included masked… read more here.
Keywords: structure elements; conserved mouse; elements conserved; structure ... See more keywords