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   Articles with "subcellular location" as a keyword



SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

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recommendations! Published in 2017 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkw1041

Abstract: The SUBcellular location database for Arabidopsis proteins (SUBA4, http://suba.live) is a comprehensive collection of manually curated published data sets of large-scale subcellular proteomics, fluorescent protein visualization, protein-protein interaction (PPI) as well as subcellular targeting calls… read more here.

Keywords: protein; suba4 interactive; analysis; subcellular location ... See more keywords

Predicting the subcellular location of prokaryotic proteins with DeepLocPro

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recommendations! Published in 2024 at "Bioinformatics"

DOI: 10.1101/2024.01.04.574157

Abstract: Protein subcellular location prediction is a widely explored task in bioinformatics because of its importance in proteomics research. We propose DeepLocPro, an extension to the popular method DeepLoc, tailored specifically to archaeal and bacterial organisms.… read more here.

Keywords: location prokaryotic; location; subcellular location; predicting subcellular ... See more keywords

Subcellular location defines GPCR signal transduction

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recommendations! Published in 2022 at "Science Advances"

DOI: 10.1126/sciadv.adf6059

Abstract: G protein-coupled receptors in intracellular organelles can be activated in response to membrane permeant ligands, which contributes to the diversity and specificity of agonist action. The opioid receptors (ORs) provide a striking example, where opioid… read more here.

Keywords: subcellular location; signal transduction; membrane; location defines ... See more keywords

IDRnet: a Novel Pixel-Enlightened Neural Network for Predicting Protein Subcellular Location Based on Interactive Pointwise Attention

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recommendations! Published in 2023 at "Current Bioinformatics"

DOI: 10.2174/1574893618666230525124954

Abstract: Understanding the subcellular location of proteins is essential for studying molecular and protein functions. Intracellular proteins must interact with appropriate molecules at the right time and in the right subcellular location to fulfill their functions.… read more here.

Keywords: pixel enlightened; subcellular location; pointwise; protein subcellular ... See more keywords

Prediction of apoptosis protein subcellular location based on amphiphilic pseudo amino acid composition

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recommendations! Published in 2023 at "Frontiers in Genetics"

DOI: 10.3389/fgene.2023.1157021

Abstract: Introduction: Apoptosis proteins play an important role in the process of cell apoptosis, which makes the rate of cell proliferation and death reach a relative balance. The function of apoptosis protein is closely related to… read more here.

Keywords: subcellular location; apoptosis; apoptosis protein; based amphiphilic ... See more keywords

The Conservation of Low Complexity Regions in Bacterial Proteins Depends on the Pathogenicity of the Strain and Subcellular Location of the Protein

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recommendations! Published in 2021 at "Genes"

DOI: 10.3390/genes12030451

Abstract: Low complexity regions (LCRs) in proteins are characterized by amino acid frequencies that differ from the average. These regions evolve faster and tend to be less conserved between homologs than globular domains. They are not… read more here.

Keywords: complexity regions; low complexity; subcellular location; conservation ... See more keywords

Predicting Essential Proteins Based on Integration of Local Fuzzy Fractal Dimension and Subcellular Location Information

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recommendations! Published in 2022 at "Genes"

DOI: 10.3390/genes13020173

Abstract: Essential proteins are indispensable to cells’ survival and development. Prediction and analysis of essential proteins are crucial for uncovering the mechanisms of cells. With the help of computer science and high-throughput technologies, forecasting essential proteins… read more here.

Keywords: subcellular location; fuzzy fractal; location information; essential proteins ... See more keywords