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Published in 2022 at "Epidemiology and Infection"
DOI: 10.1017/s0950268822000048
Abstract: Abstract By gathering 680 publicly available Sequence Read Archives from isolates of Mycobacterium tuberculosis complex (MTBC) including 190 belonging to the lineage 2 Beijing, and using an in-house bioinformatical pipeline, the TB-Annotator, that analyses more…
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Keywords:
mycobacterium tuberculosis;
tuberculosis;
two historical;
asia ancestral ... See more keywords
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Published in 2022 at "FEMS microbiology letters"
DOI: 10.1093/femsle/fnac042
Abstract: Shigellosis is one of the most important gastric infections caused by different species of Shigella and has been regarded as a serious threat to public health. Lineage/sublineage profile of S. sonnei is strongly associated with…
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Keywords:
antibiotic resistance;
sonnei strains;
shigella;
resistance ... See more keywords
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Published in 2022 at "Journal of medical microbiology"
DOI: 10.1099/jmm.0.001484
Abstract: Introduction. Invasive meningococcal disease is a major health problem, impacting morbidity and mortality worldwide. Exploratory genomics has revealed insights into adaptation, transmissibility and virulence to elucidate endemic, outbreaks or epidemics caused by Neisseria meningitidis serogroup…
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Keywords:
neisseria meningitidis;
carriage;
brazil;
emergence ... See more keywords
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Published in 2023 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000923
Abstract: Antimicrobial therapy is important for case management of diphtheria, but knowledge on the emergence of multidrug-resistance in Corynebacterium diphtheriae is scarce. We report on the genomic features of two multidrug-resistant toxigenic isolates sampled from wounds…
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Keywords:
resistant toxigenic;
resistance;
multidrug resistant;
corynebacterium diphtheriae ... See more keywords
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Published in 2023 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000989
Abstract: Limited information is available regarding the genomic characteristics of P. aeruginosa causing ear infections. Our aim is to characterize the genotypic features of an emerging ST316 sublineage causing aural infections in Shanghai. A total of…
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Keywords:
ear infections;
st316 sublineage;
sublineage causing;
causing ear ... See more keywords
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Published in 2021 at "Transboundary and emerging diseases"
DOI: 10.1111/tbed.14134
Abstract: The presence of foot-and-mouth disease virus (FMDV) of the O/ME-SA/Ind-2001e sublineage within Pakistan was initially detected in two samples collected during 2019. Analysis of further serotype O FMDVs responsible for disease outbreaks in 2019-2020 in…
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Keywords:
2001e sublineage;
foot mouth;
ind 2001e;
mouth disease ... See more keywords
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Published in 2018 at "Emerging Infectious Diseases"
DOI: 10.3201/eid2412.180409
Abstract: We used whole-genome sequencing to investigate the evolutionary context of an emerging highly pathogenic strain of Shiga toxin–producing Escherichia coli (STEC) O157:H7 in England and Wales. A timed phylogeny of sublineage IIb revealed that the…
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Keywords:
highly pathogenic;
toxin producing;
shiga toxin;
sublineage ... See more keywords
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Published in 2023 at "Veterinary Sciences"
DOI: 10.3390/vetsci10010063
Abstract: Simple Summary Porcine reproductive and respiratory syndrome virus (PRRSV) is the major cause of huge economic losses to the pig industry in China. The present study was performed to investigate the epidemiological characteristics of PRRSV…
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Keywords:
porcine reproductive;
hunan hebei;
prrsv;
epidemiology ... See more keywords