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   Articles with "substrate interactions" as a keyword



Mapping enzyme-substrate interactions: its potential to study the mechanism of enzymes.

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recommendations! Published in 2020 at "Advances in protein chemistry and structural biology"

DOI: 10.1016/bs.apcsb.2020.06.001

Abstract: With the increase of the need to use more sustainable processes for the industry in our society, the modeling of enzymes has become crucial to fully comprehend their mechanism of action and use this knowledge… read more here.

Keywords: interactions potential; mechanism; enzyme substrate; mapping enzyme ... See more keywords

Organism-substrate interactions and astrobiology: Potential, models and methods

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recommendations! Published in 2017 at "Earth-Science Reviews"

DOI: 10.1016/j.earscirev.2017.05.009

Abstract: Abstract Organism-substrate interactions and their products – biogenic structures – are important biosignatures on Earth. This study discusses the application of ichnology – the study of organism-substrate interactions – to the search for present and… read more here.

Keywords: astrobiology; biogenic structures; beyond earth; organism substrate ... See more keywords
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Effect of TiOx Substrate Interactions on the Electrocatalytic Oxygen Reduction Reaction at Au Nanoparticles

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recommendations! Published in 2020 at "Journal of Physical Chemistry C"

DOI: 10.1021/acs.jpcc.0c02754

Abstract: In this article, we report a robust model for studying electrocatalytic reactions at metal nanoparticles (NPs) in contact with metal oxide surfaces. The metal oxide layer (TiOx) is prepared by atom... read more here.

Keywords: tiox substrate; tiox; electrocatalytic oxygen; effect tiox ... See more keywords

Design of Multimodal Supramolecular Protein Assemblies via Enzyme-Substrate Interactions for Intracellular Antioxidant Regulation.

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recommendations! Published in 2025 at "Nano letters"

DOI: 10.1021/acs.nanolett.5c00296

Abstract: Allosteric modulation of protein function, which involves effector binding triggering distant conformational changes, is crucial for cellular and metabolic control. However, achieving tunable control, structural diversity, and precise intracellular regulation remains challenging. Here, we designed… read more here.

Keywords: protein assemblies; protein; supramolecular protein; enzyme substrate ... See more keywords

A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactions

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recommendations! Published in 2024 at "Nature Communications"

DOI: 10.1038/s41467-024-48446-3

Abstract: Protein ubiquitination regulates a wide range of cellular processes. The degree of protein ubiquitination is determined by the delicate balance between ubiquitin ligase (E3)-mediated ubiquitination and deubiquitinase (DUB)-mediated deubiquitination. In comparison to the E3-substrate interactions,… read more here.

Keywords: deubiquitinase substrate; protein sequence; substrate interactions; dsis ... See more keywords

Competing polymer-substrate interactions mitigate random copolymer adsorption.

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recommendations! Published in 2018 at "Soft matter"

DOI: 10.1039/c8sm01433g

Abstract: Annealing a supported polymer film in the melt state, a common practice to relieve residual stresses and erase thermal history, can result in the development of an irreversibly adsorbed nanolayer. This layer of polymer chains… read more here.

Keywords: polymer substrate; substrate interactions; adsorption; influence ... See more keywords
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Exploring graphene-substrate interactions: plasmonic excitation in Sn-intercalated epitaxial graphene

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recommendations! Published in 2024 at "2D Materials"

DOI: 10.1088/2053-1583/ad1a70

Abstract: Graphene plasmons, including those in intercalated graphene, are an important research focus, with the promise of enabling light manipulation and providing a unique platform for gaining fundamental insights into many-body electronic interactions. In the present… read more here.

Keywords: interactions plasmonic; exploring graphene; graphene substrate; substrate interactions ... See more keywords

Deubiquitinase dynamics: methodologies for understanding substrate interactions

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recommendations! Published in 2025 at "BMB Reports"

DOI: 10.5483/bmbrep.2025-0011

Abstract: Deubiquitinases (DUBs) are essential regulators of protein homeostasis that influence cellular signaling, protein stability, and degradation by removing ubiquitin chains from substrate proteins. Understanding DUB–substrate interactions is critical to elucidate their functional roles and therapeutic… read more here.

Keywords: understanding substrate; methodologies understanding; dynamics methodologies; deubiquitinase dynamics ... See more keywords