Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates
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DOI: 10.1093/bioinformatics/btad024
Abstract: Phylogenetic inference based on genomic structural variations, that manipulate the gene order and content of whole chromosomes, promises to inform a more comprehensive understanding of evolution. The first challenge in using such data, the incompleteness… read more here.
Keywords: mycobacterium tuberculosis; tuberculosis; impacts syntenic; syntenic blocks ... See more keywords
CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes
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DOI: 10.1093/bioinformatics/bty861
Abstract: MOTIVATION Identification of conserved syntenic blocks across microbial genomes is important for several problems in comparative genomics such as gene annotation, study of genome organization and evolution and prediction of gene interactions. Current tools for… read more here.
Keywords: prokaryotic genomes; discovery; syntenic blocks; gene ... See more keywords
Orthology and synteny analysis of receptor-like kinases “RLK” and receptor-like proteins “RLP” in legumes
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DOI: 10.1186/s12864-021-07384-w
Abstract: Background Legume species are an important plant model because of their protein-rich physiology. The adaptability and productivity of legumes are limited by major biotic and abiotic stresses. Responses to these stresses directly involve plasma membrane… read more here.
Keywords: rlp; receptor like; rlk rlp; syntenic blocks ... See more keywords