halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
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DOI: 10.1093/gigascience/giaa047
Abstract: Abstract Background Large-scale sequencing projects provide high-quality full-genome data that can be used for reconstruction of chromosomal exchanges and rearrangements that disrupt conserved syntenic blocks. The highest resolution of cross-species homology can be obtained on… read more here.
Keywords: full genome; whole genome; genome alignments; synteny block ... See more keywords
Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies
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DOI: 10.1093/molbev/msaa114
Abstract: Abstract Gene order can be used as an informative character to reconstruct phylogenetic relationships between species independently from the local information present in gene/protein sequences. PhyChro is a reconstruction method based on chromosomal rearrangements, applicable… read more here.
Keywords: reconstruction; phylogenetic reconstruction; synteny block; partial splits ... See more keywords
mySyntenyPortal: an application package to construct websites for synteny block analysis
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2219-x
Abstract: BackgroundAdvances in sequencing technologies have facilitated large-scale comparative genomics based on whole genome sequencing. Constructing and investigating conserved genomic regions among multiple species (called synteny blocks) are essential in the comparative genomics. However, they require… read more here.
Keywords: websites synteny; synteny block; package construct; construct websites ... See more keywords