Tandem repeat variation near the HIC1 (hypermethylated in cancer 1) promoter predicts outcome of oxaliplatin‐based chemotherapy in patients with metastatic colorectal cancer
Sign Up to like & getrecommendations! Published in 2017 at "Cancer"
DOI: 10.1002/cncr.30880
Abstract: The hypermethylated in cancer 1/sirtuin 1 (HIC1/SIRT1) axis plays an important role in regulating the nucleotide excision repair pathway, which is the main oxaliplatin‐induced damage‐repair system. On the basis of prior evidence that the variable… read more here.
Keywords: metastatic colorectal; hic1; tandem repeat; hypermethylated cancer ... See more keywords
Isometric artifacts from polymerase chain reaction‐massively parallel sequencing analysis of short tandem repeat loci: An emerging issue from a new technology?
Sign Up to like & getrecommendations! Published in 2022 at "Electrophoresis"
DOI: 10.1002/elps.202100143
Abstract: The recent introduction of polymerase chain reaction (PCR)‐massively parallel sequencing (MPS) technologies in forensics has changed the approach to allelic short tandem repeat (STR) typing because sequencing cloned PCR fragments enables alleles with identical molecular… read more here.
Keywords: chain reaction; polymerase chain; parallel sequencing; massively parallel ... See more keywords
An extra insertion of tandem repeat sequence in African swine fever virus, China, 2019
Sign Up to like & getrecommendations! Published in 2019 at "Virus Genes"
DOI: 10.1007/s11262-019-01704-9
Abstract: On 7 March 2019, African swine fever in a domestic pig farm was detected in Guangxi Province of China. The phylogenetic analysis showed that its causative strain contained two tandem repeat sequence insertions in the… read more here.
Keywords: swine fever; tandem repeat; repeat sequence; african swine ... See more keywords
Tandem Repeats and Repeatomes: Delving Deeper into the ‘Dark Matter’ of Genomes
Sign Up to like & getrecommendations! Published in 2018 at "EBioMedicine"
DOI: 10.1016/j.ebiom.2018.04.004
Abstract: The understanding of human biology and diseases, and the practice (below the threshold for HD) there was an association between CAG reof modernmedicine, is being transformed by genomics. The sequencing of the human genome (from… read more here.
Keywords: dark matter; tandem repeat; human genome; tandem repeats ... See more keywords
Multiple-locus variable-number tandem repeat analysis using multiplex polymerase chain reaction and next-generation sequencing - A novel high-throughput method for subtyping Listeria strains
Sign Up to like & getrecommendations! Published in 2018 at "Food Control"
DOI: 10.1016/j.foodcont.2018.06.006
Abstract: Abstract Listeria monocytogenes is significantly associated with listeriosis infection. Several species of Listeria other than L. monocytogenes directly affect the food industry. In the present study we developed a novel subtyping method for tracking the… read more here.
Keywords: coupled ngs; tandem repeat; variable number; mlva ... See more keywords
Forensic parameters and mutation analysis of 23 short tandem repeat (PowerPlex® Fusion System) loci in Fujian Han Chinese population.
Sign Up to like & getrecommendations! Published in 2019 at "Legal medicine"
DOI: 10.1016/j.legalmed.2019.01.005
Abstract: Kinship testing based on genetic markers has valuable practical applications. Short tandem repeat polymorphisms (STRPs) can have large number of alleles, and become the dominant marker for kinship identification. However, the high mutation rates affect… read more here.
Keywords: short tandem; tandem repeat; mutation; mutation rate ... See more keywords
Donor-Derived Neuroendocrine Carcinoma Transmission to Two Kidney Transplant Recipients Demonstrated by Short Tandem Repeat Analysis: A Case Report.
Sign Up to like & getrecommendations! Published in 2021 at "Transplantation proceedings"
DOI: 10.1016/j.transproceed.2021.03.002
Abstract: Cancer transmission from a donor organ to a transplant recipient is a rare but not infrequently fatal event. We report a case of lung cancer transmission from a deceased donor to 2 kidney recipients. Approximately… read more here.
Keywords: short tandem; transmission; tandem repeat; donor ... See more keywords
Genotyping Mycoplasma hyorhinis by multi-locus sequence typing and multiple-locus variable-number tandem-repeat analysis.
Sign Up to like & getrecommendations! Published in 2020 at "Veterinary microbiology"
DOI: 10.1016/j.vetmic.2020.108836
Abstract: Mycoplasma hyorhinis is a swine pathogen bacterium, which causes significant economic losses. The infection spreads through direct contact between the animals. Powerful genotyping methods like PCR based multi-locus sequence typing (MLST) and multiple-locus variable-number tandem-repeat… read more here.
Keywords: mlva; tandem repeat; hyorhinis; locus ... See more keywords
Molecular typing of Mycobacterium kansasii using pulsed-field gel electrophoresis and a newly designed variable-number tandem repeat analysis
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-21562-z
Abstract: Molecular epidemiological studies of Mycobacterium kansasii are hampered by the lack of highly-discriminatory genotyping modalities. The purpose of this study was to design a new, high-resolution fingerprinting method for M. kansasii. Complete genome sequence of… read more here.
Keywords: tandem repeat; kansasii; variable number; mycobacterium kansasii ... See more keywords
Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis
Sign Up to like & getrecommendations! Published in 2018 at "Communications Biology"
DOI: 10.1038/s42003-018-0094-7
Abstract: Arbuscular mycorrhizal fungus (AMF) species are some of the most widespread symbionts of land plants. Our much improved reference genome assembly of a model AMF, Rhizophagus irregularis DAOM-181602 (total contigs = 210), facilitated a discovery of repetitive… read more here.
Keywords: intragenomic heterogeneity; heterogeneity; rhizophagus irregularis; tandem repeat ... See more keywords
Valence-controlled protein conjugation on nanoparticles via re-arrangeable multivalent interactions of tandem repeat protein chains
Sign Up to like & getrecommendations! Published in 2022 at "Chemical Science"
DOI: 10.1039/d1sc06993d
Abstract: Precise control of the number of conjugated proteins on a nanoparticle surface has long been a highly challenging task. Here, we developed a one-pot, purification-free strategy for valency-controlled conjugation of tandem repeat protein chains on… read more here.
Keywords: protein chains; controlled protein; repeat protein; tandem repeat ... See more keywords