Taxon-specific variation in δ13C and δ15N of subfossil invertebrate remains: Insights into historical trophodynamics in lake food-webs
Sign Up to like & getrecommendations! Published in 2019 at "Ecological Indicators"
DOI: 10.1016/j.ecolind.2019.03.026
Abstract: Abstract Carbon and nitrogen stable isotope ratios of sub-fossil invertebrate remains are potentially powerful indicators of nutrient flux, habitat-specific resource utilization, and trophic interactions in lentic food webs, but are rarely estimated for multiple species… read more here.
Keywords: invertebrate remains; 13c 15n; taxon specific; food webs ... See more keywords
Identification of Salmonella Taxon-Specific Peptide Markers to the Serovar Level by Mass Spectrometry.
Sign Up to like & getrecommendations! Published in 2019 at "Analytical chemistry"
DOI: 10.1021/acs.analchem.8b04843
Abstract: We present an LC-MS/MS pipeline to identify taxon-specific tryptic peptide markers for the identification of Salmonella at the genus, species, subspecies, and serovar levels of specificity. Salmonella enterica subsp. enterica serovars Typhimurium and its four… read more here.
Keywords: taxon specific; peptide; salmonella; peptide markers ... See more keywords
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
Sign Up to like & getrecommendations! Published in 2018 at "Nature Communications"
DOI: 10.1038/s41467-018-04409-z
Abstract: Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea… read more here.
Keywords: taxon specific; aerosolization; aerosolization bacteria; ocean atmosphere ... See more keywords
Advancing conservation planning for western chimpanzees using IUCN SSC A.P.E.S.—the case of a taxon-specific database
Sign Up to like & getrecommendations! Published in 2019 at "Environmental Research Letters"
DOI: 10.1088/1748-9326/ab1379
Abstract: Even though information on global biodiversity trends becomes increasingly available, large taxonomic and spatial data gaps persist at the scale relevant to planning conservation interventions. This is because data collectors are hesitant to share data… read more here.
Keywords: taxon specific; western chimpanzees; conservation; iucn ssc ... See more keywords
Allometry and the calculation of zooplankton metabolism in the subarctic Northeast Pacific Ocean
Sign Up to like & getrecommendations! Published in 2021 at "Journal of Plankton Research"
DOI: 10.1093/plankt/fbab026
Abstract: Using measurements of respiration and dissolved organic carbon (DOC) excretion from the subarctic Northeast Pacific Ocean (August 2018), we explore the efficacy of pre-existing allometric relationships to predict metabolic rates of diel vertically migrating zooplankton,… read more here.
Keywords: taxon specific; pacific ocean; northeast pacific; zooplankton ... See more keywords
Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics
Sign Up to like & getrecommendations! Published in 2018 at "Proceedings of the Royal Society B: Biological Sciences"
DOI: 10.1098/rspb.2018.1524
Abstract: Understanding the evolution of Tetraconata or Pancrustacea—the clade that includes crustaceans and insects—requires a well-resolved hypothesis regarding the relationships within and among its constituent taxa. Here, we assembled a taxon-rich phylogenomic dataset focusing on crustacean… read more here.
Keywords: specific matrices; malacostraca; malacostraca branchiopoda; taxon specific ... See more keywords
Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13523
Abstract: Target capture has emerged as an important tool for phylogenetics and population genetics in non-model taxa. Whereas developing taxon-specific capture probes requires sustained efforts, available universal kits may have a lower power to reconstruct relationships… read more here.
Keywords: taxon specific; capture; study evolutionary; target capture ... See more keywords
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers
Sign Up to like & getrecommendations! Published in 2023 at "Science"
DOI: 10.1126/science.adf1323
Abstract: Taxon-specific small RNA loci are widespread in eukaryotic genomes, yet their role in lineage-specific adaptation, phenotypic diversification, and speciation is poorly understood. Here, we report that a speciation locus in monkeyflowers (Mimulus), YELLOW UPPER (YUP),… read more here.
Keywords: locus; taxon specific; specific phased; locus monkeyflowers ... See more keywords
The use of taxon-specific reference databases compromises metagenomic classification
Sign Up to like & getrecommendations! Published in 2020 at "BMC Genomics"
DOI: 10.1186/s12864-020-6592-2
Abstract: A recent article in BMC Genomics describes a new bioinformatics tool, HumanMycobiomeScan, to classify fungal taxa in metagenomic samples. This tool was used to characterize the gut mycobiome of hunter-gatherers and Western populations, resulting in… read more here.
Keywords: taxon specific; classification; reference databases; reference ... See more keywords
Taxon-Specific Proteins of the Pathogenic Entamoeba Species E. histolytica and E. nuttalli
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Cellular and Infection Microbiology"
DOI: 10.3389/fcimb.2021.641472
Abstract: The human protozoan parasite Entamoeba histolytica can live in the human intestine for months or years without generating any symptoms in the host. For unknown reasons, amoebae can suddenly destroy the intestinal mucosa and become… read more here.
Keywords: taxon specific; entamoeba; specific proteins; histolytica nuttalli ... See more keywords
Organisms Composing an Experimental Coral Reef Community from Mo'orea, French Polynesia, Exhibit Taxon-Specific Net Production: Net Calcification Ratios
Sign Up to like & getrecommendations! Published in 2017 at "Frontiers in Marine Science"
DOI: 10.3389/fmars.2017.00298
Abstract: Current research on coral reefs seeks to link the responses to anthropogenic stressors (such as global warming and ocean acidification [OA]) among differing functional levels of biological organization. While experimental studies have identified ex situ… read more here.
Keywords: taxon specific; production; light intensity; community ... See more keywords