Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Sign Up to like & getrecommendations! Published in 2019 at "Ecology and Evolution"
DOI: 10.1002/ece3.4814
Abstract: Abstract High‐throughput sequencing has the potential to describe biological communities with high efficiency yet comprehensive assessment of diversity with species‐level resolution remains one of the most challenging aspects of metabarcoding studies. We investigated the utility… read more here.
Keywords: sequence databases; reference; reference sequence; taxonomic assignments ... See more keywords
DNA barcodes enable higher taxonomic assignments in the Acari
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DOI: 10.1038/s41598-021-95147-8
Abstract: Although mites (Acari) are abundant in many terrestrial and freshwater ecosystems, their diversity is poorly understood. Since most mite species can be distinguished by variation in the DNA barcode region of cytochrome c oxidase I,… read more here.
Keywords: barcodes enable; dna; higher taxonomic; dna barcodes ... See more keywords
ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences
Sign Up to like & getrecommendations! Published in 2021 at "PeerJ"
DOI: 10.7717/peerj.11865
Abstract: Background High-throughput sequencing of phylogenetically informative marker genes is a widely used method to assess the diversity and composition of microbial communities. Taxonomic assignment of sampled marker gene sequences (referred to as amplicon sequence variants,… read more here.
Keywords: ensembletax package; reference; taxonomic assignments; marker ... See more keywords