Taxonomic Profiling of Bacteria and Fungi in Freshwater Sewer Receiving Hospital Wastewater.
Sign Up to like & getrecommendations! Published in 2020 at "Environmental research"
DOI: 10.1016/j.envres.2020.110319
Abstract: Consistent discharges of hospital wastewaters (HWWs) pose ecological risk to the biome of the receiving environment with cumulative effect on its healthiness. Understanding the taxonomic profile of microorganisms in the impacted systems is required to… read more here.
Keywords: fungi freshwater; taxonomic profiling; profiling bacteria; bacteria fungi ... See more keywords
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes
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DOI: 10.1038/s41467-024-47155-1
Abstract: Metagenomic analysis typically includes read-based taxonomic profiling, assembly, and binning of metagenome-assembled genomes (MAGs). Here we integrate these steps in Read Annotation Tool (RAT), which uses robust taxonomic signals from MAGs and contigs to enhance… read more here.
Keywords: taxonomic profiling; read annotation; rat; taxonomic signals ... See more keywords
The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities
Sign Up to like & getrecommendations! Published in 2024 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkae1004
Abstract: Abstract Determining the taxonomic composition (taxonomic profiling) is a fundamental task in studying environmental and host-associated microbial communities. However, genome-resolved microbial diversity on Earth remains undersampled, and accessing the genomic context of taxa detected during… read more here.
Keywords: database; taxonomic profiling; online database; microbial communities ... See more keywords