Retention Time Prediction for TMT-Labeled Peptides in Proteomic LC-MS Experiments.
Sign Up to like & getrecommendations! Published in 2022 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.1c00833
Abstract: We present the first detailed study of chromatographic behavior of peptides labeled with tandem mass tags (TMT and TMTpro) in 2D LC for proteomic applications. Carefully designed experimental procedures have permitted generating data sets of… read more here.
Keywords: retention; retention time; tmt; labeled peptides ... See more keywords
Deephos: Predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation.
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac280
Abstract: MOTIVATION Tandem mass tag (TMT)-based tandem mass spectrometry (MS/MS) has become the method of choice for the quantification of post-translational modifications in complex mixtures. Many cancer proteogenomic studies have highlighted the importance of large-scale phosphopeptide… read more here.
Keywords: tmt; database; deephos; tmt labeled ... See more keywords
Shotgun and TMT-Labeled Proteomic Analysis of the Ovarian Proteins of an Insect Vector, Aedes aegypti (Diptera: Culicidae)
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Insect Science"
DOI: 10.1093/jisesa/ieac018
Abstract: Abstract Aedes aegypti [Linnaeus in Hasselquist; yellow fever mosquito] transmits several viruses that infect millions of people each year, including Zika, dengue, yellow fever, chikungunya, and West Nile. Pathogen transmission occurs during blood feeding. Only… read more here.
Keywords: aedes aegypti; shotgun tmt; labeled proteomic; iron ... See more keywords