ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa147
Abstract: SUMMARY Current methods for comparing RNA secondary structures are based on tree representations and exploit edit distance or alignment algorithms. Most of them can only process structures without pseudoknots. To overcome this limitation we introduce… read more here.
Keywords: rna secondary; tool alignment; secondary structures; aspralign tool ... See more keywords
Ksak: A high-throughput tool for alignment-free phylogenetics
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2023.1050130
Abstract: Phylogenetic tools are fundamental to the studies of evolutionary relationships. In this paper, we present Ksak, a novel high-throughput tool for alignment-free phylogenetic analysis. Ksak computes the pairwise distance matrix between molecular sequences, using seven… read more here.
Keywords: tool; ksak; alignment free; throughput tool ... See more keywords