RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Sign Up to like & getrecommendations! Published in 2019 at "BMC Bioinformatics"
DOI: 10.1186/s12859-019-2704-x
Abstract: BackgroundIn bacterial genomes, there are two mechanisms to terminate the DNA transcription: the “intrinsic” or Rho-independent termination and the Rho-dependent termination. Intrinsic terminators are characterized by a RNA hairpin followed by a run of 6–8 U… read more here.
Keywords: intrinsic terminators; transcription terminators; dependent terminators; rho dependent ... See more keywords
Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators
Sign Up to like & getrecommendations! Published in 2022 at "PLoS Computational Biology"
DOI: 10.1371/journal.pcbi.1010240
Abstract: It is well-established that neural networks can predict or identify structural motifs of non-coding RNAs (ncRNAs). Yet, the neural network based identification of RNA structural motifs is limited by the availability of training data that… read more here.
Keywords: pre training; training; inverse folding; intrinsic transcription ... See more keywords
Evaluation and Comparison of the Efficiency of Transcription Terminators in Different Cyanobacterial Species
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2020.624011
Abstract: Cyanobacteria utilize sunlight to convert carbon dioxide into a wide variety of secondary metabolites and show great potential for green biotechnology applications. Although cyanobacterial synthetic biology is less mature than for other heterotrophic model organisms,… read more here.
Keywords: transcription; transcription terminators; gene expression; evaluation comparison ... See more keywords