Urinary extracellular vesicles contain mature transcriptome enriched in circular and long noncoding RNAs with functional significance in prostate cancer
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Extracellular Vesicles"
DOI: 10.1002/jev2.12210
Abstract: Abstract Long noncoding (lnc)RNAs modulate gene expression alongside presenting unexpected source of neoantigens. Despite their immense interest, their ability to be transferred and control adjacent cells is unknown. Extracellular Vesicles (EVs) offer a protective environment… read more here.
Keywords: long noncoding; prostate cancer; transcriptome; extracellular vesicles ... See more keywords
A Transcriptome Sequencing Study on Genome-Wide Gene Expression Differences of 3D Cultured Chondrocytes in Hydrogel Scaffolds with Different Gel Density.
Sign Up to like & getrecommendations! Published in 2020 at "Macromolecular bioscience"
DOI: 10.1002/mabi.202000028
Abstract: Hydrogel is considered as a promising cell delivery vehicle in cartilage tissue engineering, whose tunable microenvironments may influence the function and fate of encapsulated chondrocytes. Here, the transcriptomes of chondrocytes that are encapsulated and cultured… read more here.
Keywords: gel density; gene expression; transcriptome; expression ... See more keywords
Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-4035-6_14
Abstract: The development of High Throughput Sequencing (HTS) for RNA profiling (RNA-seq) has shed light on the diversity of transcriptomes. While RNA-seq is becoming a de facto standard for monitoring the population of expressed transcripts in… read more here.
Keywords: transcriptome sequencing; transcriptome; biology; pipeline transcriptome ... See more keywords
Optimized Whole Transcriptome Profiling of Motor Axons.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7231-9_16
Abstract: In highly polarized cells such as neurons, most RNA molecules are not randomly distributed but sorted into different compartments. So far, methods to analyze the transcriptome in distinct subcellular compartments are not well established. Here,… read more here.
Keywords: whole transcriptome; motor axons; transcriptome; transcriptome profiling ... See more keywords
Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7834-2_11
Abstract: The transcriptome encompasses a range of species including messenger RNA, and other noncoding RNA such as rRNA, tRNA, and short and long noncoding RNAs. Due to the huge role played by mRNA in development and… read more here.
Keywords: molecule sequencing; single molecule; rna; transcriptome ... See more keywords
Transcriptome-Guided Identification of Carbohydrate Active Enzymes (CAZy) from the Christmas Island Red Crab, Gecarcoidea natalis and a Vote for the Inclusion of Transcriptome-Derived Crustacean CAZys in Comparative Studies
Sign Up to like & getrecommendations! Published in 2018 at "Marine Biotechnology"
DOI: 10.1007/s10126-018-9836-2
Abstract: The Christmas Island red crab, Gecarcoidea natalis, is an herbivorous land crab that consumes mostly fallen leaf litter. In order to subsist, G. natalis would need to have developed specialised digestive enzymes capable of supplying… read more here.
Keywords: cazys; crab; christmas island; transcriptome ... See more keywords
The priming fingerprint on the plant transcriptome investigated through meta-analysis of RNA-Seq data
Sign Up to like & getrecommendations! Published in 2020 at "European Journal of Plant Pathology"
DOI: 10.1007/s10658-019-01928-3
Abstract: Plants may enter into a state of alert that allows them to deploy defensive measures in a more effective way upon stress occurrence. This phenomenon is termed defense priming, and it is started in plants… read more here.
Keywords: plant; seq data; transcriptome; rna seq ... See more keywords
Comprehensive transcriptome analysis of Lactuca indica, a traditional medicinal wild plant
Sign Up to like & getrecommendations! Published in 2017 at "Molecular Breeding"
DOI: 10.1007/s11032-017-0711-z
Abstract: Lactuca indica Linn. (Indian lettuce) is an undomesticated, traditional medicinal plant belonging to the Compositae family. Here, we performed transcriptome assembly and functional annotation of this medicinal plant, along with secondary metabolite analysis. Sesquiterpene lactones,… read more here.
Keywords: plant; analysis; traditional medicinal; transcriptome ... See more keywords
Interaction of roses with a biotrophic and a hemibiotrophic leaf pathogen leads to differences in defense transcriptome activation
Sign Up to like & getrecommendations! Published in 2018 at "Plant Molecular Biology"
DOI: 10.1007/s11103-018-00818-2
Abstract: Key messageTranscriptomic analysis resulted in the upregulation of the genes related to common defense mechanisms for black spot and the downregulation of the genes related to photosynthesis and cell wall modification for powdery mildew.AbstractPlant pathogenic… read more here.
Keywords: pathogen; defense; regulated genes; differentially regulated ... See more keywords
Comparative transcriptome analysis of MeJA-responsive AP2/ERF transcription factors involved in notoginsenosides biosynthesis
Sign Up to like & getrecommendations! Published in 2020 at "3 Biotech"
DOI: 10.1007/s13205-020-02246-w
Abstract: Differential transcriptome analysis is an effective method for gene selection of triterpene saponin biosynthetic pathways. MeJA-induced differential transcriptome of Panax notoginseng has not been analyzed yet. In this study, comparative transcriptome analysis of P. notoginseng… read more here.
Keywords: analysis; transcriptome; meja; erf transcription ... See more keywords
Transcriptome-based analysis on carbon metabolism of Haematococcus pluvialis mutant under 15% CO2.
Sign Up to like & getrecommendations! Published in 2017 at "Bioresource technology"
DOI: 10.1016/j.biortech.2017.02.121
Abstract: To elucidate the mechanism underlying the enhanced growth rate in the Haematococcus pluvialis mutated with 60Co-γ rays and domesticated with 15% CO2, transcriptome sequencing was conducted to clarify the carbon metabolic pathways of mutant cells.… read more here.
Keywords: co2; transcriptome; carbon; haematococcus pluvialis ... See more keywords