Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
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DOI: 10.1093/gigascience/giy158
Abstract: Abstract Background De novo transcriptome assemblies are required prior to analyzing RNA sequencing data from a species without an existing reference genome or transcriptome. Despite the prevalence of transcriptomic studies, the effects of using different… read more here.
Keywords: microbial eukaryotic; reference; transcriptome assemblies; assembly quality ... See more keywords
Optimization and application of non-native Phragmites australis transcriptome assemblies
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DOI: 10.1371/journal.pone.0280354
Abstract: Phragmites australis (common reed) has a cosmopolitan distribution and has been suggested as a model organism for the study of invasive plant species. In North America, the non-native subspecies (ssp. australis) is widely distributed across… read more here.
Keywords: phragmites australis; australis transcriptome; transcriptome assembly; non native ... See more keywords