LAUSR

About LAUSR
Donate
Contact Us

Follow us:

You are not signed in:

Sign Up!


   Articles with "transcriptome assembly" as a keyword



De novo transcriptome assembly of shrimp Palaemon serratus

Sign Up to like & get
recommendations! Published in 2017 at "Genomics Data"

DOI: 10.1016/j.gdata.2016.12.009

Abstract: The shrimp Palaemon serratus is a coastal decapod crustacean with a high commercial value. It is harvested for human consumption. In this study, we used Illumina sequencing technology (HiSeq 2000) to sequence, assemble and annotate… read more here.

Keywords: palaemon serratus; novo transcriptome; serratus; transcriptome assembly ... See more keywords

De novo transcriptome assembly for the lung of the ornamented pygmy frog (Microhyla fissipes)

Sign Up to like & get
recommendations! Published in 2017 at "Genomics Data"

DOI: 10.1016/j.gdata.2017.07.002

Abstract: Microhyla fissipes, belonging to Neobatrachia, is a new model organism to study developmental biology, adaptive mechanisms from aquatic to terrestrial life, environmental toxicology, and human disease. M. fissipes use of lungs soon after hatching makes… read more here.

Keywords: novo transcriptome; transcriptome assembly; assembly lung; microhyla fissipes ... See more keywords

De novo transcriptome assembly of a facultative parasitic nematode Pelodera (syn. Rhabditis) strongyloides.

Sign Up to like & get
recommendations! Published in 2019 at "Gene"

DOI: 10.1016/j.gene.2019.05.041

Abstract: Pelodera strongyloides is a generally free-living gonochoristic facultative nematode. The whole genomic sequence of P. strongyloides remains unknown but 4 small subunit ribosomal RNA (ssrRNA) gene sequences are available. This project launched a de novo… read more here.

Keywords: novo transcriptome; pelodera; transcriptome assembly; rna ... See more keywords

De novo transcriptome assembly and comparative analysis between male and benzyladenine-induced female inflorescence buds of Plukenetia volubilis.

Sign Up to like & get
recommendations! Published in 2018 at "Journal of plant physiology"

DOI: 10.1016/j.jplph.2017.12.006

Abstract: Plukenetia volubilis is a promising oilseed crop due to its seeds being rich in unsaturated fatty acids, especially alpha-linolenic acid. P. volubilis is monoecious, with separate male and female flowers on the same inflorescence. We… read more here.

Keywords: novo transcriptome; plukenetia volubilis; transcriptome assembly; inflorescence ... See more keywords

De novo transcriptome assembly and preliminary analyses of two avian malaria parasites, Plasmodium delichoni and Plasmodium homocircumflexum.

Sign Up to like & get
recommendations! Published in 2018 at "Genomics"

DOI: 10.1016/j.ygeno.2018.12.004

Abstract: Parasites of the genus Plasmodium infect a wide array of hosts, causing malaria in all major groups of terrestrial vertebrates including primates, reptiles, and birds. Molecular mechanisms explaining why some Plasmodium species are virulent, while… read more here.

Keywords: delichoni; transcriptome assembly; two avian; homocircumflexum ... See more keywords

De novo transcriptome assembly and protein profiling of copper-induced lignocellulolytic fungus Ganoderma lucidum MDU-7 reveals genes involved in lignocellulose degradation and terpenoid biosynthetic pathways.

Sign Up to like & get
recommendations! Published in 2019 at "Genomics"

DOI: 10.1016/j.ygeno.2019.01.012

Abstract: Ganoderma lucidum is an important medicinal fungus that possesses exceedingly high lignocellulose degrading ability. Evidently, Cu2+ has decisive roles on the mycelial growth and enzyme production. To reveal the effect of Cu2+ on G. lucidum… read more here.

Keywords: novo transcriptome; fungus; ganoderma lucidum; transcriptome assembly ... See more keywords

The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825

Sign Up to like & get
recommendations! Published in 2024 at "Scientific Data"

DOI: 10.1038/s41597-024-03226-y

Abstract: Freshwater mussels of the order Unionida are a global conservation concern. Species of this group are strictly freshwater, sessile, slow-growing animals and, extremely sensitive to environmental changes. Human-mediated changes in freshwater habitats are imposing enormous… read more here.

Keywords: unio elongatulus; elongatulus pfeiffer; european freshwater; pfeiffer 1825 ... See more keywords

De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies

Sign Up to like & get
recommendations! Published in 2025 at "Scientific Data"

DOI: 10.1038/s41597-025-04496-w

Abstract: Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance… read more here.

Keywords: novo transcriptome; transcriptome assembly; perna viridis; toxicology ... See more keywords

The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species

Sign Up to like & get
recommendations! Published in 2025 at "Scientific Data"

DOI: 10.1038/s41597-025-04559-y

Abstract: Mytella strigata, a potentially invasive species native to South America, is rapidly spreading across various aquatic ecosystems around the globe, posing a threat to native mussels. This study presents the first comprehensive de novo transcriptome… read more here.

Keywords: novo transcriptome; mytella strigata; transcriptome assembly; invasive species ... See more keywords

De novo transcriptome assembly and annotation of the semi-wild Gayal (Bos frontalis)

Sign Up to like & get
recommendations! Published in 2025 at "Scientific Data"

DOI: 10.1038/s41597-025-04927-8

Abstract: The Gayal (Bos frontalis) is a rare semi-wild Bovine species that inhabits the harsh environments of Indo-China. Although the origins of the Gayal remain largely enigmatic, addressing the lack of comprehensive transcriptomic data is critical… read more here.

Keywords: semi wild; novo transcriptome; transcriptome assembly; bos frontalis ... See more keywords

Ulmus minor response to Dutch elm disease: de novo transcriptome assembly and annotation

Sign Up to like & get
recommendations! Published in 2025 at "Scientific Data"

DOI: 10.1038/s41597-025-05539-y

Abstract: Dutch elm disease (DED), caused by Ophiostoma novo-ulmi (ONU), has devastated elm populations across Europe and North America since the 20th century. In this work, a de novo transcriptome assembly of Ulmus minor in response… read more here.

Keywords: novo transcriptome; response; ulmus minor; transcriptome assembly ... See more keywords