Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-4035-6_14
Abstract: The development of High Throughput Sequencing (HTS) for RNA profiling (RNA-seq) has shed light on the diversity of transcriptomes. While RNA-seq is becoming a de facto standard for monitoring the population of expressed transcripts in… read more here.
Keywords: transcriptome sequencing; transcriptome; biology; pipeline transcriptome ... See more keywords
Conduct and Quality Control of Differential Gene Expression Analysis Using High-Throughput Transcriptome Sequencing (RNASeq).
Sign Up to like & getrecommendations! Published in 2019 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-8669-9_2
Abstract: High-throughput transcriptome sequencing (RNASeq) represents one of the most comprehensive and scalable methods to analyze global gene expression. It allows for absolute quantification of gene expression and also enables the discovery of novel transcripts and… read more here.
Keywords: gene expression; transcriptome sequencing; throughput transcriptome; gene ... See more keywords
Transcriptome sequencing reveals role of light in promoting anthocyanin accumulation of strawberry fruit
Sign Up to like & getrecommendations! Published in 2018 at "Plant Growth Regulation"
DOI: 10.1007/s10725-018-0415-3
Abstract: The woodland strawberry, Fragaria vesca, is a model plant for the diverse Rosaceae family, which contains many valuable fruit and ornamental crops. Light is an important external environment factor which influences all aspects of plant… read more here.
Keywords: accumulation; sugar accumulation; fruit; strawberry fruit ... See more keywords
Establishment of a lncRNA-miRNA-mRNA network in a rat model of atrial fibrosis by whole transcriptome sequencing
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Interventional Cardiac Electrophysiology"
DOI: 10.1007/s10840-022-01120-4
Abstract: Dysregulation of long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) plays important roles in atrial fibrillation (AF). This study aimed to identify crucial lncRNAs, miRNAs, and mRNAs in AF based on whole transcriptome sequencing. Thirty Sprague… read more here.
Keywords: transcriptome sequencing; whole transcriptome; atrial fibrosis; model ... See more keywords
Transcriptome sequencing and microsatellite marker discovery in Ailanthus altissima (Mill.) Swingle (Simaroubaceae).
Sign Up to like & getrecommendations! Published in 2021 at "Molecular biology reports"
DOI: 10.1007/s11033-020-05402-w
Abstract: Ailanthus altissima Swingle, is a tree species native to East Asia and has a great potential in decorative, bioenergy and industrial applications in many countries. To date, despite its commercial importance, the genomic and genetic… read more here.
Keywords: ailanthus altissima; haploid diversity; sequencing microsatellite; transcriptome sequencing ... See more keywords
Transcriptome sequencing and estimation of DNA methylation level in the subsocial wood-feeding cockroach Cryptocercus punctulatus (Blattodea: Cryptocercidae)
Sign Up to like & getrecommendations! Published in 2017 at "Applied Entomology and Zoology"
DOI: 10.1007/s13355-017-0519-7
Abstract: The wood-feeding cockroach genus Cryptocercus is a subsocial and sister group of the eusocial cockroaches, i.e., termites. Although Cryptocercus is a key taxon for understanding the evolution of eusociality in the Blattodea (cockroaches and termites),… read more here.
Keywords: transcriptome sequencing; dna methylation; cryptocercus;
Transcriptome sequencing and functional characterization of new sesquiterpene synthases from Curcuma wenyujin.
Sign Up to like & getrecommendations! Published in 2021 at "Archives of biochemistry and biophysics"
DOI: 10.1016/j.abb.2021.108986
Abstract: Tubers of Curcuma wenyujin are rich in essential oils, mainly various sesquiterpenes, showing antibacterial, anti-viral and anti-tumor effects. However, the molecular mechanism of C. wenyujin is deficient and related sesquiterpene synthases are still unclear. In… read more here.
Keywords: sesquiterpene synthases; sesquiterpene; curcuma wenyujin; sequencing functional ... See more keywords
Transcriptome sequencing reveals the involvement of reactive oxygen species in the hematopoiesis from Chinese mitten crab Eriocheir sinensis
Sign Up to like & getrecommendations! Published in 2018 at "Developmental and Comparative Immunology"
DOI: 10.1016/j.dci.2017.12.030
Abstract: ABSTRACT Reactive oxygen species (ROS) produced in vivo during various electron transfer reactions are generally kept at a certain level since they are harmful to cells. However, it can sensitize hematopoietic progenitors to differentiation, and… read more here.
Keywords: reactive oxygen; hpt; oxygen species; level ... See more keywords
Transcriptome sequencing reveals prenatal PFOS exposure on liver disorders.
Sign Up to like & getrecommendations! Published in 2017 at "Environmental pollution"
DOI: 10.1016/j.envpol.2017.01.041
Abstract: Perfluorooctane sulfonate (PFOS), a hepatic toxicant and a potential hepatocarcinogen, is commonly used in industrial products. The widespread contamination of PFOS in human maternal and cord blood has raised concerns about its potential risks to… read more here.
Keywords: exposure; pfos; liver; transcriptome sequencing ... See more keywords
Whole transcriptome sequencing analyses of DHA treated glioblastoma cells
Sign Up to like & getrecommendations! Published in 2019 at "Journal of the Neurological Sciences"
DOI: 10.1016/j.jns.2018.11.027
Abstract: Glioblastoma (GBM) is a typical malignant tumor, and there are no effective drugs capable of improving patient survival. Docosahexaenoic acid (DHA), a nutrient essential to animal health and neurodevelopment, exerts an anticancer effect in several… read more here.
Keywords: glioblastoma; whole transcriptome; gbm; cells whole ... See more keywords
Sensitive and Low-Bias Transcriptome Sequencing Using Agarose PCR.
Sign Up to like & getrecommendations! Published in 2022 at "ACS applied materials & interfaces"
DOI: 10.1021/acsami.2c02133
Abstract: Transcriptome sequencing has emerged as an important research tool for exploring the mysteries of life at the single-cell level. However, its wide application is limited by the bias associated with the amplification reactions which is… read more here.
Keywords: agarose pcr; sensitive low; amplification; transcriptome sequencing ... See more keywords