Analysis of codon usage bias of chloroplast genes in Oryza species : Codon usage of chloroplast genes in Oryza species.
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DOI: 10.1007/s00425-020-03470-7
Abstract: MAIN CONCLUSION The codon usage bias in chloroplast genes of Oryza species was low and AT rich. The pattern of codon usage was different among Oryza species and mainly influenced by mutation pressure and natural… read more here.
Keywords: chloroplast genes; oryza species; codon usage; usage bias ... See more keywords
Analysis of codon usage bias in mitochondrial CO gene among Platyhelminthes.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular and biochemical parasitology"
DOI: 10.1016/j.molbiopara.2021.111410
Abstract: The phenomenon of non-uniform usage of the synonymous codons, where some codons are given more preference to others, is known as codon usage bias (CUB). CUB is known to be determined by two major evolutionary… read more here.
Keywords: codon usage; selection; usage bias; usage ... See more keywords
Genome-wide codon usage pattern analysis reveals the correlation between codon usage bias and gene expression in Cuscuta australis.
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DOI: 10.1016/j.ygeno.2020.03.002
Abstract: The protein-coding genes and pseudogenes of Cuscuta australis had the diverse contribution to the formation and evolution of parasitism. The codon usage pattern analysis of these two type genes could be used to understand the… read more here.
Keywords: usage bias; protein coding; codon usage; gene expression ... See more keywords
The Codon Statistics Database: A Database of Codon Usage Bias
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DOI: 10.1093/molbev/msac157
Abstract: Motivation Most amino acids can be encoded by a set of synonymous codons. Often, for any given amino acid, certain codons are significantly more used than others, a phenomenon known as codon usage bias. The… read more here.
Keywords: usage bias; database; codon usage; codon ... See more keywords
Comparative Plastomes of Species from Phrymaceae and Mazaceae: Insights into Adaptive Evolution, Codon Usage Bias and Phylogenetic Relationships.
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DOI: 10.1139/gen-2023-0014
Abstract: The phylogeny of the species from Phrymaceae and Mazaceae has undergone many adjustments and changes in recent years. Moreover, there is little plastome information on the Phrymaceae. In this study, we compared the plastomes of… read more here.
Keywords: codon usage; comparative plastomes; phrymaceae mazaceae; usage bias ... See more keywords
Polyploidization is accompanied by synonymous codon usage bias in the chloroplast genomes of both cotton and wheat
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DOI: 10.1371/journal.pone.0242624
Abstract: Synonymous codon usage bias (SCUB) of both nuclear and organellar genes can mirror the evolutionary specialization of plants. The polyploidization process exposes the nucleus to genomic shock, a syndrome which promotes, among other genetic variants,… read more here.
Keywords: synonymous codon; chloroplast genomes; wheat; codon usage ... See more keywords
The first study on analysis of the codon usage bias and evolutionary analysis of the glycoprotein envelope E2 gene of seven Pestiviruses
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DOI: 10.14202/vetworld.2022.1857-1868
Abstract: Background and Aim: Pestivirus, a genus of the Flaviviridae family, comprises viruses that affect bovines, sheep, and pigs. Symptoms, including hemorrhagic syndromes, abortion, respiratory complications, and deadly mucosal diseases, are produced in infected animals, which… read more here.
Keywords: gene; codon usage; analysis; usage bias ... See more keywords
Pervasive Strong Selection at the Level of Codon Usage Bias in Drosophila melanogaster.
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DOI: 10.1534/genetics.119.302542
Abstract: Codon usage bias (CUB), where certain codons are used more frequently than expected by chance, is a ubiquitous phenomenon and occurs across the tree of life. The dominant paradigm is that the proportion of preferred… read more here.
Keywords: cub; codon usage; strong selection; selection ... See more keywords
Enterovirus A Shows Unique Patterns of Codon Usage Bias in Conventional Versus Unconventional Clade
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Cellular and Infection Microbiology"
DOI: 10.3389/fcimb.2022.941325
Abstract: Enterovirus A (EV-A) species cause hand, foot and mouth disease (HFMD), threatening the health of young children. Understanding the mutual codon usage pattern of the virus and its host(s) has fundamental and applied values. Here,… read more here.
Keywords: usage bias; codon usage; unconventional clade; codon ... See more keywords
Alteration of synonymous codon usage bias accompanies polyploidization in wheat
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.979902
Abstract: The diploidization of polyploid genomes is accompanied by genomic variation, including synonymous nucleotide substitutions that may lead to synonymous codon usage bias (SCUB). SCUB can mirror the evolutionary specialization of plants, but its effect on… read more here.
Keywords: codon usage; hexaploid wheat; wheat; synonymous codon ... See more keywords
Codon Usage of Hepatitis E Viruses: A Comprehensive Analysis
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DOI: 10.3389/fmicb.2022.938651
Abstract: Hepatitis E virus (HEV) is an emerging zoonotic pathogen with multiple species and genotypes, which may be classified into human, animal, and zoonotic HEV. Codon usage bias of HEV remained unclear. This study aims to… read more here.
Keywords: codon usage; hev hev; analysis; hev ... See more keywords