Microbiome Analysis Using 16S Amplicon Sequencing: From Samples to ASVs.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1103-6_7
Abstract: In this chapter, we will present an outline of a typical experimental and bioinformatic workflow for identification of bacterial amplicon sequence variants (ASVs) present in a set of samples. This chapter is written from a… read more here.
Keywords: analysis; microbiome analysis; using 16s; 16s amplicon ... See more keywords
Microbiome shifts in sprouts (alfalfa, radish, and rapeseed) during production from seed to sprout using 16S rRNA microbiome sequencing.
Sign Up to like & getrecommendations! Published in 2022 at "Food research international"
DOI: 10.1016/j.foodres.2021.110896
Abstract: Sprouts harbor high levels of bacteria and have been implicated in massive outbreaks of foodborne illnesses. The elucidation of microbial profiles in sprouts is important; however, little is known about the changes in the microbial… read more here.
Keywords: using 16s; production; seed; 16s rrna ... See more keywords
Clinicopathologic Features and Pathogens of Granulomatous Lobular Mastitis
Sign Up to like & getrecommendations! Published in 2023 at "Breast Care"
DOI: 10.1159/000529391
Abstract: Background: Granulomatous lobular mastitis (GLM) is a rare, benign, and complex breast disease that can be easily misdiagnosed as breast cancer. The etiology of GLM is unclear, and optimal treatment has not been established. Methods:… read more here.
Keywords: using 16s; 16s rdna; granulomatous lobular; rdna sequencing ... See more keywords
Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1901-8
Abstract: BackgroundQuantification and identification of microbial genomes based on next-generation sequencing data is a challenging problem in metagenomics. Although current methods have mostly focused on analyzing bacteria whose genomes have been sequenced, such analyses are, however,… read more here.
Keywords: unknown bacteria; 16s rrna; rrna gene; using 16s ... See more keywords
The microbiome of diabetic foot ulcers: a comparison of swab and tissue biopsy wound sampling techniques using 16S rRNA gene sequencing
Sign Up to like & getrecommendations! Published in 2020 at "BMC Microbiology"
DOI: 10.1186/s12866-020-01843-2
Abstract: Background Health-care professionals need to collect wound samples to identify potential pathogens that contribute to wound infection. Obtaining appropriate samples from diabetic foot ulcers (DFUs) where there is a suspicion of infection is of high… read more here.
Keywords: tissue biopsies; tissue; 16s rrna; rrna gene ... See more keywords
Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencing
Sign Up to like & getrecommendations! Published in 2018 at "Microbiome"
DOI: 10.1186/s40168-018-0501-9
Abstract: BackgroundThe caecal microbiota plays a key role in chicken health and performance, influencing digestion and absorption of nutrients, and contributing to defence against colonisation by invading pathogens. Measures of productivity and resistance to pathogen colonisation… read more here.
Keywords: 16s rdna; microbiota; indigenous indian; caecal microbiota ... See more keywords