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   Articles with "using nanopore" as a keyword



Accurate and Cost‐Efficient Whole Genome Sequencing of Hepatitis B Virus Using Nanopore

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recommendations! Published in 2024 at "Journal of Medical Virology"

DOI: 10.1002/jmv.70630

Abstract: Deep sequencing of the whole hepatitis B virus genome increases the analytical resolution and has the potential to improve molecular epidemiology investigations. The aim of this study was to develop and evaluate the performance of… read more here.

Keywords: hepatitis virus; using nanopore; whole genome; genome ... See more keywords
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Rapid Pathogen Detection in Infectious Uveitis Using Nanopore Metagenomic Next-Generation Sequencing: A Preliminary Study.

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recommendations! Published in 2023 at "Ocular immunology and inflammation"

DOI: 10.1080/09273948.2023.2173243

Abstract: PURPOSE We establish an accurate and rapid diagnostic method for pathogen detection in infectious uveitis using nanopore metagenomic next-generation sequencing (NGS). METHODS In eight patients with suspected infectious uveitis, we prospectively compared the accuracy and… read more here.

Keywords: nanopore metagenomic; pathogen detection; using nanopore; infectious uveitis ... See more keywords

Near Full-Length Genomic Characterization of a Novel HIV-1 Unique Recombinant (A1/D/K) from an Immigrant Worker in China Using Nanopore Sequencing

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recommendations! Published in 2025 at "AIDS Research and Human Retroviruses"

DOI: 10.1089/aid.2024.0108

Abstract: Recombination contributes substantially to the genetic diversity of HIV-1. Here we reported a novel HIV-1 recombinant detected from a Chinese labor who had been to Uganda as an immigrant worker using nanopore sequencing. Near full-length… read more here.

Keywords: hiv; novel hiv; using nanopore; immigrant worker ... See more keywords
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A workflow for accurate metabarcoding using nanopore MinION sequencing

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recommendations! Published in 2021 at "Methods in Ecology and Evolution"

DOI: 10.1111/2041-210x.13561

Abstract: Metabarcoding has become a common approach to the rapid identification of the species composition in a mixed sample. The majority of studies use established short‐read high‐throughput sequencing platforms. The Oxford Nanopore MinIONTM, a portable sequencing… read more here.

Keywords: consensus; workflow accurate; nanopore minion; accurate metabarcoding ... See more keywords
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Profiling of circular RNA N6 -methyladenosine in moso bamboo (Phyllostachys edulis) using nanopore-based direct RNA sequencing.

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recommendations! Published in 2020 at "Journal of integrative plant biology"

DOI: 10.1111/jipb.13002

Abstract: N6 -methyladenosine (m6 A) is a prevalent modification in messenger RNAs and circular RNAs that plays important roles in regulating various aspects of RNA metabolism. However, the occurrence of the m6 A modification in plant… read more here.

Keywords: circular rnas; using nanopore; based direct; rna ... See more keywords

Identification of the Novel HLA‐B*13:212 Allele Using Nanopore Sequencing

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recommendations! Published in 2025 at "HLA"

DOI: 10.1111/tan.70307

Abstract: HLA‐B*13:212 differs from HLA‐B*13:01:01:01 by one nucleotide substitution at codon 128 in exon 3. read more here.

Keywords: novel hla; identification novel; 212 allele; using nanopore ... See more keywords

Accurate prenatal diagnosis of facioscapulohumeral muscular dystrophy 1 using nanopore sequencing

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recommendations! Published in 2024 at "Journal of Medical Genetics"

DOI: 10.1136/jmg-2023-109832

Abstract: Background Facioscapulohumeral muscular dystrophy 1 (FSHD1) is an autosomal dominant muscular disorder mainly caused by the contraction and hypomethylation of the D4Z4 repeat array in chromosome 4q35. Prenatal diagnosis of FSHD1 is challenging due to… read more here.

Keywords: facioscapulohumeral muscular; using nanopore; muscular dystrophy; nanopore sequencing ... See more keywords

Rapid diagnosis of intra-amniotic infection using nanopore-based sequencing

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recommendations! Published in 2022 at "Journal of Perinatal Medicine"

DOI: 10.1515/jpm-2022-0504

Abstract: Abstract Objectives Early diagnosis and treatment of intra-amniotic infection is crucial. Rapid pathogen identification allows for a definite diagnosis and enables proper management. We determined whether the 16S amplicon sequencing performed by a nanopore sequencing… read more here.

Keywords: amniotic infection; intra amniotic; diagnosis; using nanopore ... See more keywords

Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing

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recommendations! Published in 2022 at "Frontiers in Genetics"

DOI: 10.3389/fgene.2022.867018

Abstract: Occurrence of extra-chromosomal circular DNA is a phenomenon frequently observed in tumor cells, and the presence of such DNA has been recognized as a marker of adverse outcome across cancer types. We here describe a… read more here.

Keywords: circular dna; dna; dna fragments; detection ... See more keywords

Genetic Surveillance of Five SARS-CoV-2 Clinical Samples in Henan Province Using Nanopore Sequencing

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recommendations! Published in 2022 at "Frontiers in Immunology"

DOI: 10.3389/fimmu.2022.814806

Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread and poses a major threat to public health worldwide. The whole genome sequencing plays a crucial role in virus surveillance and evolutionary analysis. In this… read more here.

Keywords: surveillance five; genetic surveillance; using nanopore; nanopore sequencing ... See more keywords

Agreement between Phenotypically Detected Linezolid Resistance and Mutations in rrl and rplC Genes of Mycobacterium tuberculosis Isolates Using Nanopore Sequencing.

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recommendations! Published in 2024 at "International journal of mycobacteriology"

DOI: 10.4103/ijmy.ijmy_139_24

Abstract: BACKGROUND Phenotypic drug susceptibility testing (DST) is considered the gold standard for detecting linezolid (LZD) resistance in Mycobacterium tuberculosis (MTB), but it is time-consuming. Nanopore sequencing offers a potentially faster alternative approach. This study evaluated… read more here.

Keywords: resistance; lzd resistance; using nanopore; rplc genes ... See more keywords