Efficient taxa identification using a pangenome index.
Sign Up to like & getrecommendations! Published in 2023 at "Genome research"
DOI: 10.1101/gr.277642.123
Abstract: Tools that classify sequencing reads against a database of reference sequences require efficient index data structures. The r-index is a compressed full-text index that answers substring presence/absence, count and locate queries in space proportional to… read more here.
Keywords: index; using pangenome; efficient taxa; pangenome index ... See more keywords
SNP Discovery Using a Pangenome: Has the Single Reference Approach Become Obsolete?
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DOI: 10.3390/biology6010021
Abstract: Increasing evidence suggests that a single individual is insufficient to capture the genetic diversity within a species due to gene presence absence variation. In order to understand the extent to which genomic variation occurs in… read more here.
Keywords: using pangenome; analysis; reference; snp discovery ... See more keywords