Variable number of tandem repeats of 9 Plasmodium vivax genes among Southeast Asian isolates.
Sign Up to like & getrecommendations! Published in 2017 at "Acta tropica"
DOI: 10.1016/j.actatropica.2017.01.013
Abstract: The variable number of tandem repeats (VNTRs) provides valuable information about both the functional and evolutionary aspects of genetic diversity. Comparative analysis of 3 Plasmodium falciparum genomes has shown that more than 9% of its… read more here.
Keywords: vivax genes; southeast asian; variable number; tandem repeats ... See more keywords
Multiple-locus variable-number tandem repeat analysis using multiplex polymerase chain reaction and next-generation sequencing - A novel high-throughput method for subtyping Listeria strains
Sign Up to like & getrecommendations! Published in 2018 at "Food Control"
DOI: 10.1016/j.foodcont.2018.06.006
Abstract: Abstract Listeria monocytogenes is significantly associated with listeriosis infection. Several species of Listeria other than L. monocytogenes directly affect the food industry. In the present study we developed a novel subtyping method for tracking the… read more here.
Keywords: coupled ngs; tandem repeat; variable number; mlva ... See more keywords
Diversity identification of KPC- producing Klebsiella pneumoniae using multilocus variable number tandem repeat analysis.
Sign Up to like & getrecommendations! Published in 2022 at "Indian journal of medical microbiology"
DOI: 10.1016/j.ijmmb.2022.01.003
Abstract: PURPOSE The current study aimed to determine blaKPC, blaGES, blaVIM, blaNDM, blaOXA-23, and blaOXA-48 genes in clinical strains of Klebsiella pneumoniae isolated in Tehran, Iran to assess genetic diversity using MLVA as a typing method.… read more here.
Keywords: diversity; klebsiella pneumoniae; variable number; pneumoniae ... See more keywords
Multiple-locus variable-number tandem-repeat analysis in Salmonella isolates as an effective molecular subtyping method.
Sign Up to like & getrecommendations! Published in 2017 at "Microbial pathogenesis"
DOI: 10.1016/j.micpath.2017.10.007
Abstract: Due to the limitations of serotyping, to differentiate closely related microbial isolates and to investigate disease outbreaks, molecular genotyping methods including multiple loci variable number of tandem repeats (VNTR) analysis (MLVA) has been developed. The… read more here.
Keywords: loci; salmonella; salmonella isolates; method ... See more keywords
Multiple locus variable number tandem repeat analysis for the characterization of wild feline Bartonella species and subspecies.
Sign Up to like & getrecommendations! Published in 2020 at "Veterinary microbiology"
DOI: 10.1016/j.vetmic.2020.108788
Abstract: Bartonella genus includes an increasing number of species and subspecies, especially among wild felids, the positioning of which, with regards to the zoonotic species Bartonella henselae, is important to determine. The aim of this study… read more here.
Keywords: bartonella; species subspecies; wild felids; variable number ... See more keywords
Molecular typing of Mycobacterium kansasii using pulsed-field gel electrophoresis and a newly designed variable-number tandem repeat analysis
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-21562-z
Abstract: Molecular epidemiological studies of Mycobacterium kansasii are hampered by the lack of highly-discriminatory genotyping modalities. The purpose of this study was to design a new, high-resolution fingerprinting method for M. kansasii. Complete genome sequence of… read more here.
Keywords: tandem repeat; kansasii; variable number; mycobacterium kansasii ... See more keywords
Particle swarm optimization for problems with variable number of dimensions
Sign Up to like & getrecommendations! Published in 2018 at "Engineering Optimization"
DOI: 10.1080/0305215x.2017.1316845
Abstract: ABSTRACT Some real-life optimization problems, apart from dependence on the combination of state variables, also show dependence on the complexity of the model describing the problem. Changing model complexity implies changing the number of decision… read more here.
Keywords: number dimensions; swarm optimization; number; particle swarm ... See more keywords
A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis.
Sign Up to like & getrecommendations! Published in 2019 at "Journal of medical microbiology"
DOI: 10.1099/jmm.0.001095
Abstract: Purpose. Human-adapted Bordetella parapertussis is one of the causative agents of whooping cough; however, there are currently no genotyping systems with high discriminatory power for this bacterial pathogen. We therefore aimed to develop a multilocus… read more here.
Keywords: mlva; number tandem; parapertussis; variable number ... See more keywords
Nonnegative Matrix Factorization Based Consensus for Clusterings With a Variable Number of Clusters
Sign Up to like & getrecommendations! Published in 2018 at "IEEE Access"
DOI: 10.1109/access.2018.2874038
Abstract: Consensus clustering is an aggregation of base clusterings into an ensemble clustering which is better than the individual base clusterings. It is beneficial to determine the clusters from heterogeneous data. This paper presents a new… read more here.
Keywords: number clusters; base clusterings; consensus; base ... See more keywords
Differentiation of Clavibacter michiganensis subsp. sepedonicus using PCR melting profile and variable number of tandem repeat methods
Sign Up to like & getrecommendations! Published in 2019 at "Letters in Applied Microbiology"
DOI: 10.1111/lam.13081
Abstract: The potato phytopathogen Clavibacter michiganensis subsp. sepedonicus (Cms) is a causative agent of bacterial ring rot, which is a serious threat to crops. In EU member countries, Cms is subject to quarantine and has to… read more here.
Keywords: tandem repeat; number tandem; variable number; michiganensis ... See more keywords
Modification of a multiple‐locus variable number tandem repeat analysis (MLVA) for typing isolates of Erwinia amylovora
Sign Up to like & getrecommendations! Published in 2017 at "Plant Pathology"
DOI: 10.1111/ppa.12660
Abstract: &NA; Erwinia amylovora, the causal agent of fire blight that affects economically important rosaceous plants, is reported among the most important plant pathogenic bacteria. The low genetic diversity within E. amylovora and the lack of… read more here.
Keywords: mlva; number tandem; variable number; tandem repeat ... See more keywords