Lightning-fast genome variant detection with GROM
Sign Up to like & getrecommendations! Published in 2017 at "GigaScience"
DOI: 10.1093/gigascience/gix091
Abstract: Abstract Current human whole genome sequencing projects produce massive amounts of data, often creating significant computational challenges. Different approaches have been developed for each type of genome variant and method of its detection, necessitating users… read more here.
Keywords: lightning fast; snvs indels; detection; genome variant ... See more keywords
Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing.
Sign Up to like & getrecommendations! Published in 2023 at "Microbial genomics"
DOI: 10.1099/mgen.0.001013
Abstract: Most biologically relevant and diagnostic mutations in the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genome have been identified in the S gene through global genomic surveillance efforts. However, large-scale whole-genome sequencing (WGS) is still challenging… read more here.
Keywords: cov variant; cost effective; variant detection; gene ... See more keywords
Deep-Ensemble and Multifaceted Behavioral Malware Variant Detection Model
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Access"
DOI: 10.1109/access.2022.3168794
Abstract: Every day, hundreds of thousands of new malware programs are developed and spread worldwide in cyberspace. Most of these malware programs are malware variants such as polymorphic and metamorphic malware, which are created from older… read more here.
Keywords: malware variant; variant detection; detection model; malware ... See more keywords
Abstract 2067: Rapid somatic and germline variant detection using the novel G4 sequencing platform and GPU acceleration
Sign Up to like & getrecommendations! Published in 2023 at "Cancer Research"
DOI: 10.1158/1538-7445.am2023-2067
Abstract: Introduction: There remains a need to reduce next-generation sequencing (NGS) turnaround for time-sensitive applications. Reducing turnaround requires faster sequencing and accelerated data analysis. We recently introduced the Singular Genomics G4TM platform for rapid sequencing-by-synthesis (SBS),… read more here.
Keywords: germline variant; variant detection; gpu; detection ... See more keywords
SARS-CoV-2 variant detection from wastewater: rapid spread of B.1.1.7 lineage in Hungary.
Sign Up to like & getrecommendations! Published in 2022 at "Journal of water and health"
DOI: 10.2166/wh.2022.179
Abstract: Wastewater-based epidemiology (WBE) is a recognised tool for tracking community transmission of COVID-19. From the second half of 2020, the emergence of new, highly infective, more pathogenic or vaccine-escape SARS-CoV-2 variants is the major public… read more here.
Keywords: cov variant; wastewater; variant detection; detection ... See more keywords
Bioinformatics: From NGS Data to Biological Complexity in Variant Detection and Oncological Clinical Practice
Sign Up to like & getrecommendations! Published in 2022 at "Biomedicines"
DOI: 10.3390/biomedicines10092074
Abstract: The use of next-generation sequencing (NGS) techniques for variant detection has become increasingly important in clinical research and in clinical practice in oncology. Many cancer patients are currently being treated in clinical practice or in… read more here.
Keywords: bioinformatics ngs; clinical practice; variant detection; ngs data ... See more keywords