Machine Learning-Assisted Real-Time Polymerase Chain Reaction and High-Resolution Melt Analysis for SARS-CoV-2 Variant Identification
Sign Up to like & getrecommendations! Published in 2023 at "Analytical Chemistry"
DOI: 10.1021/acs.analchem.2c05112
Abstract: Since the declaration of COVID-19 as a pandemic in early 2020, multiple variants of the severe acute respiratory syndrome-related coronavirus (SARS-CoV-2) have been detected. The emergence of multiple variants has raised concerns due to their… read more here.
Keywords: cov variant; variant identification; machine learning; time polymerase ... See more keywords
TSomVar: a tumor-only somatic and germline variant identification method with random forest
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac381
Abstract: Somatic variants act as critical players during cancer occurrence and development. Thus, an accurate and robust method to identify them is the foundation of cutting-edge cancer genome research. However, due to low accessibility and high… read more here.
Keywords: variant identification; tumor somatic; method; tumor ... See more keywords
Benchmarking variant identification tools for plant diversity discovery
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DOI: 10.1186/s12864-019-6057-7
Abstract: BackgroundThe ability to accurately and comprehensively identify genomic variations is critical for plant studies utilizing high-throughput sequencing. Most bioinformatics tools for processing next-generation sequencing data were originally developed and tested in human studies, raising questions… read more here.
Keywords: plant; diversity; benchmarking variant; reference ... See more keywords
SARS-CoV-2 variant identification using a genome tiling array and genotyping probes.
Sign Up to like & getrecommendations! Published in 2023 at "Personalized medicine"
DOI: 10.2217/pme-2022-0013
Abstract: With over 5.5 million deaths worldwide attributed to the respiratory disease COVID-19 caused by the novel coronavirus SARS-CoV-2, it is essential that continued efforts be made to track the evolution and spread of the virus… read more here.
Keywords: cov variant; cov genome; variant identification; identification using ... See more keywords
PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification
Sign Up to like & getrecommendations! Published in 2022 at "PeerJ"
DOI: 10.7717/peerj.13300
Abstract: Motivation Since the identification of the novel coronavirus (SARS-CoV-2), the scientific community has made a huge effort to understand the virus biology and to develop vaccines. Next-generation sequencing strategies have been successful in understanding the… read more here.
Keywords: pipecov pipeline; variant identification; identification; sars cov ... See more keywords