The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Animal Science and Biotechnology"
DOI: 10.1186/s40104-019-0359-0
Abstract: The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from individual… read more here.
Keywords: variants rna; method; gatk joint; calling variants ... See more keywords
Genomic variants from RNA-seq for goats resistant or susceptible to gastrointestinal nematode infection
Sign Up to like & getrecommendations! Published in 2021 at "PLoS ONE"
DOI: 10.1371/journal.pone.0248405
Abstract: Gastrointestinal nematodes (GIN) are an important constraint in small ruminant production. Genetic selection for resistant animals is a potential sustainable control strategy. Advances in molecular genetics have led to the identification of several molecular genetic… read more here.
Keywords: variants rna; genomic variants; seq goats; goats resistant ... See more keywords