Host-Associated Bacteriophage Isolation and Preparation for Viral Metagenomics.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7683-6_1
Abstract: Prokaryotic viruses, or bacteriophages, are viruses that infect bacteria and archaea. These viruses have been known to associate with host systems for decades, yet only recently have their influence on the regulation of host-associated bacteria… read more here.
Keywords: prokaryotic viruses; host; associated bacteriophage; host associated ... See more keywords
Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
Sign Up to like & getrecommendations! Published in 2020 at "Archives of Virology"
DOI: 10.1007/s00705-020-04549-y
Abstract: Sapoviruses (SAVs), including several genogroups (GI to GV), are one of the causes of acute gastroenteritis (AGE). In this study, viral metagenomics revealed the presence of sapoviruses of different genogroups in stool from children with… read more here.
Keywords: genogroups stool; different genogroups; acute gastroenteritis; viral metagenomics ... See more keywords
Viral Metagenomics Analysis of Rodents From Two Border Provinces Located in Northeast and Southwest China
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2021.701089
Abstract: Objective Wild animal pathogen surveillance will help to understand the next possible pandemic in advance. Rodents, which have close contact with humans, are generally regarded as a key factor for zoonotic disease control. Given the… read more here.
Keywords: analysis; located northeast; heilongjiang yunnan; provinces located ... See more keywords
Contamination Issue in Viral Metagenomics: Problems, Solutions, and Clinical Perspectives
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2021.745076
Abstract: We describe the most common internal and external sources and types of contamination encountered in viral metagenomic studies and discuss their negative impact on sequencing results, particularly for low-biomass samples and clinical applications. We also… read more here.
Keywords: contamination issue; issue viral; contamination; metagenomics problems ... See more keywords
Viral metagenomics combined with metabolomics reveals the role of gut viruses in mouse model of depression
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2022.1046894
Abstract: Depression is a heterogeneous mental disorder that has been linked to disturbances in the gut microbiome. As an essential part of the gut microbiome, gut virome may play critical roles in disease progression and development.… read more here.
Keywords: depression; viral metagenomics; gut virome; model depression ... See more keywords
Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial
Sign Up to like & getrecommendations! Published in 2019 at "Genes"
DOI: 10.3390/genes10090655
Abstract: Shotgun metagenomics using next generation sequencing (NGS) is a promising technique to analyze both DNA and RNA microbial material from patient samples. Mostly used in a research setting, it is now increasingly being used in… read more here.
Keywords: metagenomics clinical; virology; clinical realm; lessons learned ... See more keywords
The Human Virome: Viral Metagenomics, Relations with Human Diseases, and Therapeutic Applications
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DOI: 10.3390/v14020278
Abstract: The human body is colonized by a wide range of microorganisms. The field of viromics has expanded since the first reports on the detection of viruses via metagenomic sequencing in 2002. With the continued development… read more here.
Keywords: metagenomics relations; human virome; human diseases; virome viral ... See more keywords
Viral Metagenomics for the Identification of Emerging Infections in Clinical Samples with Inconclusive Dengue, Zika, and Chikungunya Viral Amplification
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DOI: 10.3390/v14091933
Abstract: Viral metagenomics is increasingly being used for the identification of emerging and re-emerging viral pathogens in clinical samples with unknown etiology. The objective of this study was to shield light on the metavirome composition in… read more here.
Keywords: identification; samples inconclusive; amplification; identification emerging ... See more keywords
Viral Metagenomics Reveals Diverse Viruses in Tissue Samples of Diseased Pigs
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DOI: 10.3390/v14092048
Abstract: The swine industry plays an essential role in agricultural production in China. Diseases, especially viral diseases, affect the development of the pig industry and threaten human health. However, at present, the tissue virome of diseased… read more here.
Keywords: diseased pigs; metagenomics reveals; reveals diverse; tissue virome ... See more keywords
Viral Metagenomics as a Tool to Track Sources of Fecal Contamination: A One Health Approach
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DOI: 10.3390/v15010236
Abstract: The One Health framework recognizes that human, animal, and environmental health are linked and highly interdependent. Fecal contamination of water, soil, foodstuff, and air may impact many aspects of One Health, and culture, PCR-based, and… read more here.
Keywords: contamination; sources fecal; fecal contamination; one health ... See more keywords
Enhanced Viral Metagenomics with Lazypipe 2
Sign Up to like & getrecommendations! Published in 2022 at "Viruses"
DOI: 10.3390/v15020431
Abstract: Viruses are the main agents causing emerging and re-emerging infectious diseases. It is therefore important to screen for and detect them and uncover the evolutionary processes that support their ability to jump species boundaries and… read more here.
Keywords: metagenomics lazypipe; enhanced viral; detection; viral metagenomics ... See more keywords