Solving the species problem in viral taxonomy: recommendations on non-Latinized binomial species names and on abandoning attempts to assign metagenomic viral sequences to species taxa
Sign Up to like & getrecommendations! Published in 2019 at "Archives of Virology"
DOI: 10.1007/s00705-019-04320-y
Abstract: Properties useful for defining virus species are phenotypic properties of viruses that can be altered by a few mutations. Such properties include the natural host range, cell and tissue tropism, symptomatology, pathogenicity and mode of… read more here.
Keywords: viral taxonomy; viral sequences; species names; virus species ... See more keywords
Detecting viral sequences in NGS data.
Sign Up to like & getrecommendations! Published in 2019 at "Current opinion in virology"
DOI: 10.1016/j.coviro.2019.07.010
Abstract: Next generation sequencing (NGS) technologies provide an increasingly important avenue for detecting known viruses, and for discovering novel viruses present in clinical or environmental samples. Several computational pipelines capable of identifying and classifying viral sequences… read more here.
Keywords: detecting viral; virology; sequences ngs; ngs data ... See more keywords
Putative RNA viral sequences detected in an Ixodes scapularis-derived cell line.
Sign Up to like & getrecommendations! Published in 2017 at "Ticks and tick-borne diseases"
DOI: 10.1016/j.ttbdis.2016.10.005
Abstract: Ticks harbour various microorganisms, some of which act as pathogens of humans and animals. The recent advancement of genome sequencing technologies revealed that a wide range of previously unrecognised microorganisms exist in ticks. Continuous cell… read more here.
Keywords: sequences detected; putative rna; rna viral; viral sequences ... See more keywords
Virxicon: a lexicon of viral sequences
Sign Up to like & getrecommendations! Published in 2021 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa1066
Abstract: Abstract Motivation Viruses are the most abundant biological entities and constitute a large reservoir of genetic diversity. In recent years, knowledge about them has increased significantly as a result of dynamic development in life sciences… read more here.
Keywords: virxicon lexicon; viral sequences; lexicon viral;
Virtifier: a deep learning-based identifier for viral sequences from metagenomes
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btab845
Abstract: MOTIVATION Viruses, the most abundant biological entities on earth, are important components of microbial communities, and as major human pathogens, they are responsible for human mortality and morbidity. The identification of viral sequences from metagenomes… read more here.
Keywords: deep learning; virtifier deep; viral sequences; sequences metagenomes ... See more keywords
Viral Sequences Are Repurposed for Controlling Antiviral Responses as Non-Retroviral Endogenous Viral Elements.
Sign Up to like & getrecommendations! Published in 2022 at "Acta medica Okayama"
DOI: 10.18926/amo/64025
Abstract: Eukaryotic genomes contain numerous copies of endogenous viral elements (EVEs), most of which are considered endogenous retrovirus (ERV) sequences. Over the past decade, non-retroviral endogenous viral elements (nrEVEs) derived from ancient RNA viruses have been… read more here.
Keywords: viral sequences; viral elements; endogenous viral; sequences repurposed ... See more keywords
Viral Sequences Detection by High-Throughput Sequencing in Cerebrospinal Fluid of Individuals with and without Central Nervous System Disease
Sign Up to like & getrecommendations! Published in 2019 at "Genes"
DOI: 10.3390/genes10080625
Abstract: Meningitis, encephalitis, and myelitis are various forms of acute central nervous system (CNS) inflammation, which can coexist and lead to serious sequelae. Known aetiologies include infections and immune-mediated processes. Despite advances in clinical microbiology over… read more here.
Keywords: central nervous; microbiology; viral sequences; throughput sequencing ... See more keywords