The Root Canal Microbiome Diversity and Function. A Whole- Metagenome Shotgun analysis.
Sign Up to like & getrecommendations! Published in 2023 at "International endodontic journal"
DOI: 10.1111/iej.13911
Abstract: AIM Evaluate the root canal microbiome composition and bacterial functional capability in cases of primary and secondary apical periodontitis utilizing whole-metagenome shotgun sequencing. METHODOLOGY Twenty-two samples from patients with primary root canal infections, and eighteen… read more here.
Keywords: diversity; whole metagenome; root canal; metagenome shotgun ... See more keywords
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
Sign Up to like & getrecommendations! Published in 2020 at "Genome Biology"
DOI: 10.1186/s13059-020-1933-7
Abstract: Microbial populations exhibit functional changes in response to different ambient environments. Although whole metagenome sequencing promises enough raw data to study those changes, existing tools are limited in their ability to directly compare microbial metabolic… read more here.
Keywords: whole metagenome; carnelian uncovers; across diverse; study ... See more keywords
Exploring the Microbial Community and Functional Characteristics of the Livestock Feces Using the Whole Metagenome Shotgun Sequencing
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Microbiology and Biotechnology"
DOI: 10.4014/jmb.2209.09013
Abstract: The foodborne illness is the important public health concerns, and the livestock feces are known to be one of the major reservoirs of foodborne pathogens. Also, it was reported that 45.5% of foodborne illness outbreaks… read more here.
Keywords: foodborne pathogens; shotgun sequencing; livestock feces; whole metagenome ... See more keywords
Kelpie: generating full-length ‘amplicons’ from whole-metagenome datasets
Sign Up to like & getrecommendations! Published in 2019 at "PeerJ"
DOI: 10.7717/peerj.6174
Abstract: Introduction Whole-metagenome sequencing can be a rich source of information about the structure and function of entire metagenomic communities, but getting accurate and reliable results from these datasets can be challenging. Analysis of these datasets… read more here.
Keywords: whole metagenome; full length; metagenome datasets; primer sequences ... See more keywords