Transcriptome-Wide Profiling of RNA Stability.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1851-6_17
Abstract: Gene expression is controlled at multiple levels, including RNA transcription and turnover. But determining the relative contributions of RNA biogenesis and decay to the steady-state abundance of cellular transcripts remains challenging because conventional transcriptomics approaches… read more here.
Keywords: profiling rna; rna stability; transcriptome wide; wide profiling ... See more keywords
Genome-Wide Profiling of Histone Modifications with ChIP-Seq.
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9865-4_9
Abstract: Chromatin immunoprecipitation coupled with sequencing (ChIP-seq) is a widely used method for mapping the genome-wide locations of chromatin-associated proteins. This protocol has been developed and utilized to perform ChIP on histone covalent modifications in various… read more here.
Keywords: chip seq; genome wide; wide profiling; histone ... See more keywords
Genome-wide profiling of the 3' ends of polyadenylated RNAs.
Sign Up to like & getrecommendations! Published in 2017 at "Methods"
DOI: 10.1016/j.ymeth.2017.06.003
Abstract: Alternative polyadenylation (APA) diversifies the 3' termini of a majority of mRNAs in most eukaryotes, and is consequently inferred to have substantial consequences for the utilization of post-transcriptional regulatory mechanisms. Since conventional RNA-sequencing methods do… read more here.
Keywords: genome wide; profiling ends; polyadenylated rnas; ends polyadenylated ... See more keywords
Genome wide profiling in oral squamous cell carcinoma identifies a four genetic marker signature of prognostic significance
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DOI: 10.1371/journal.pone.0174865
Abstract: Background Cancers of the oral cavity are primarily oral squamous cell carcinomas (OSCCs). Many of the OSCCs present at late stages with an exceptionally poor prognosis. A probable limitation in management of patients with OSCC… read more here.
Keywords: genome wide; chromosomal regions; oral squamous; squamous cell ... See more keywords
Genome-wide profiling of histone modifications in Plasmodium falciparum using CUT&RUN
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DOI: 10.26508/lsa.202201778
Abstract: We present a detailed step-wise protocol for reliable genome-wide profiling of histone modifications using CUT&RUN that requires only low numbers of Plasmodium falciparum blood stages. We recently adapted a CUT&RUN protocol for genome-wide profiling of… read more here.
Keywords: histone modifications; cut run; genome wide; wide profiling ... See more keywords
Genome-Wide Profiling of Small RNAs and Degradome Revealed Conserved Regulations of miRNAs on Auxin-Responsive Genes during Fruit Enlargement in Peaches
Sign Up to like & getrecommendations! Published in 2017 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms18122599
Abstract: Auxin has long been known as a critical phytohormone that regulates fruit development in plants. However, due to the lack of an enlarged ovary wall in the model plants Arabidopsis and rice, the molecular regulatory… read more here.
Keywords: genome wide; fruit; genes fruit; profiling small ... See more keywords